| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5114 |
|---|
| Symbol | |
|---|
| ID | 5193450 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5745437 |
|---|
| End bp | 5746396 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640589597 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001270416 |
|---|
| Protein GI | 148550314 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGAT ACGCCCCTAG AATCTTCGCC ACTGCACTGA TCGCACTGCT CGCTGCAGCC
GGCGGGCTGG GGTACTGGAA GTCGCTTCAC GACCAGTTGC CCGAAGGCCT GAGCATGGGC
AACGGCCGCC TTGAAGCCAC CGAAGTGCAG ATCGCCAGCA AGATCCCCGG TCGCCTGGCC
GAAGTACTGG TCGATGAAGG CGACAACGTG ACCCGTGGCC AGCTACTGGC ACGCATCGAC
ACACGCACCA TGGAAGCCCA GCGCAGCCAG GCCGAAGCCG AAGTGCTGCG CGCCCGGGAA
AACTACGCCG CCGCCCAGGC CACCGTGCAA CTGCGCCAGA GTGAACTGCT GTTGGCCAGC
CAGGAGCTCA AGCGCGTACG CGAAATCTTC CAGCGCAAGT TCGCCAGCCA GCAGTTGCTC
GACCAACAGC AGGCGCGCTT TGACACGGCC AACGCAGCAG TAGTCGCTGC CCGCGCCCAA
CTGGCAGCGA TCAAGGCCGC CATTGGCGCC GCCGAAGCCC AAGTGGCGCA GCTCACCAGC
GAAATCGACG ACAGCAGCCT GCGTGCGCCC ATCAACGGCA TCATCCAGCT GCGCCTGGCC
GAACCCGGTG AAGTGCTGGG TGCCGGCGGC CGTGTGCTGA TGCTGATCGA CCCCAGCGAC
CAGTACATGA ACCTGTACCT CCCGGCCTCT ACCAGCGGCC GGCTGACTGT AGGCGACCAG
GCGCGCATCG TGCTCGACGC CCTGCCCGAG CGCGCGCTGC CGGCCAAGGT GGCCTTTGTC
GCAGCCAAGG CCCAGTTCAC CCCCAAACAG GTGGAAACCC GCGACGAACG GCAAAAGCTG
GTGTTCCGGG TCAAACTGCG CCTGAGCGAC CCAGGCGCCG TGCCGCAAGC CAAACCAGGC
ATGCCAGGCG CCGGCTATGT ACGCACGGCT GAGGTGGACT GGCCGGCCAA CCTGCAATGA
|
|---|
| Protein sequence | MNRYAPRIFA TALIALLAAA GGLGYWKSLH DQLPEGLSMG NGRLEATEVQ IASKIPGRLA
EVLVDEGDNV TRGQLLARID TRTMEAQRSQ AEAEVLRARE NYAAAQATVQ LRQSELLLAS
QELKRVREIF QRKFASQQLL DQQQARFDTA NAAVVAARAQ LAAIKAAIGA AEAQVAQLTS
EIDDSSLRAP INGIIQLRLA EPGEVLGAGG RVLMLIDPSD QYMNLYLPAS TSGRLTVGDQ
ARIVLDALPE RALPAKVAFV AAKAQFTPKQ VETRDERQKL VFRVKLRLSD PGAVPQAKPG
MPGAGYVRTA EVDWPANLQ
|
|---|
| |