| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5088 |
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| Symbol | |
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| ID | 5190643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5716926 |
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| End bp | 5718023 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640589571 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001270390 |
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| Protein GI | 148550288 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.781791 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAAA TGGGCAAGAC GTTGCTGGCC GCCGCCCTGA TGGGTGCCAT GGCCTCCGCT
GTTCAGGCTG AAGACAAAGT GTTGAACGTC TATAACTGGT CGGACTACAT CGCTCCGGAC
ACCATCGCCA AGTTCGAGAA GCAGACAGGG ATCAAGGTCA AGTACGACGT CTTCGACAGC
AACGAAACCC TGGAAGCCAA GCTGCTGGCA GGCAAGTCGG GCTACGACAT CGTCGTGCCT
TCGAACAATT TCCTGGCCAA GCAGATCAAG GCGGGCGTGT ACGAGGAGCT GGACCGGTCC
AAGCTGCCGA ACTGGAAGAA CCTCGACCCC GACCTGCTCA AGGCCGTTGG CGATGCCAGC
GACAAGGACA ACAAGCATGC CTTCCCTTAC ATGTGGGGCT CGATCGGCAT CGGCTACAAC
CCGGAAAAGG TCAAGGCTGC CCTGGGCGTG GACAAGATCG ATTCGTGGGA TGTGGTGTTC
AAGCCTGAGA ACATCGCCAA GCTCAAGAGC TGCGGCGTGA GCTTCCTCGA CGCCCCGACC
GAAATGCTCC CGGCTGCGCT GCACTACCTC GGCAAGCCGA CCGACAGCAC CAAGAAAGAA
GACCTGAAGG CCGCCGAGGA CCTGTTCCTC AAGATCCGTC CTTCGATCAC CTATTTCCAC
TCGTCCAAGT ACATCGGCGA CATGGCCAAC GGCAACATCT GTGTAGCCGT CGGTTACTCG
GGTGACCTGG AGCAATCCAA GGCCCGTGCC CATGAAGCGG GCGACAAGGT CAAAGTGGAC
TACGTCATTC CGAAGGAAGG TGCCGGTACT TTCTACGACA TGGTCGCCAT CCCGAAAGAT
GCCGAGCATA AAGACGCGGC CTACGAGTTC ATGAACTTCC TGATGCAGCC GGAAATCATG
GCTGAAATCA CCAACGCCGT GCGCTTCCCG AACGGTAACG CTGCTGCCAC CCCGTTCGTG
GACAAAGACA TCACCAGCGA CCCAAGCATC TACCCGCCTG CCGAAGTGAA GAAGCAGCTG
TATGCGATCG CTGCGCCTGA CGCTTCTGTG CAGCGAGTGA TCACCCGCAG CTGGACGAAG
ATCAAGTCGG GCAAGTAA
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| Protein sequence | MNKMGKTLLA AALMGAMASA VQAEDKVLNV YNWSDYIAPD TIAKFEKQTG IKVKYDVFDS
NETLEAKLLA GKSGYDIVVP SNNFLAKQIK AGVYEELDRS KLPNWKNLDP DLLKAVGDAS
DKDNKHAFPY MWGSIGIGYN PEKVKAALGV DKIDSWDVVF KPENIAKLKS CGVSFLDAPT
EMLPAALHYL GKPTDSTKKE DLKAAEDLFL KIRPSITYFH SSKYIGDMAN GNICVAVGYS
GDLEQSKARA HEAGDKVKVD YVIPKEGAGT FYDMVAIPKD AEHKDAAYEF MNFLMQPEIM
AEITNAVRFP NGNAAATPFV DKDITSDPSI YPPAEVKKQL YAIAAPDASV QRVITRSWTK
IKSGK
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