| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5081 |
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| Symbol | |
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| ID | 5192278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5709687 |
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| End bp | 5710754 |
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| Gene Length | 1068 bp |
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| Protein Length | 355 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640589564 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001270383 |
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| Protein GI | 148550281 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.167851 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.243186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCGTC TGCTGCTGAT GCTGTCGGCC GGAGTGCTGC TGGTCGGTTG CAGTAGCGAA
GAAGAGGCAC CAGAGGCGAT CCGGCCAGTG CTGTCGGTCA AGGTCGAACC CCAGGTGCAG
TCACAGCTGG GCCGCTTCGC CGGCAGTATT CAGGCGCGCT TCGAAAGCAC CTTGGGCTTC
CGGGTTTCCG GGCGCATTGC CCGGCGCTGG CTGGACGTGG GCGCCCAGGT GAAACCGGGC
GACACTTTGG CCACCCTGGA CCCCACCGAC CAGCAGAACC AGCTGCGCGC CGCCGAAGGC
GATCTGGCCA AGGTGCAGGC ACAGTGGATC AACGCCCAGG CCGATGCCCG TCGCCAGCAG
CAGTTGTATG ACCGTGGGGT AGGCGCCCAG GCACAGCTGG ATATTGCCCA GACCAACCTG
AAAACCACCA GTGCGGCGTT GGAGCAGGCG CGCTCCGCCG TCAGCCAGGC CCGCGACCAG
CTCGACTACA GCACCCTGCG TACCGACCAC GCTGCCGTGA TTACTGCGTG GCAGGCCGAA
GCCGGGCAAA CCGTTACCGC CGGGCAAGCC GTGGTGACCC TGGCCCGGCC AGACGTGAAG
GAAGCGGTAA TCGACCTGCC GATCGATCTG GCCGAGCAGT TGAGCAAAGG CCTGACCTTC
ACCGTTGCTT CGCAACTGGA CCCGACCATC AACACCACGG CCAGCCTGCG CGAACTGGAG
CCCCAGGCCG ATGCCACCAC CCGGACCCGC CGTGCTCGCC TGACCCTGGC CAGCACACCG
GCGGCCTTTC ACCTTGGCAC CGCCATCAGT GTGACCCTTA GCTCGGAAGT GTCCCCGCGC
AGCGAACTGC CCTTGAGTGC CTTGCTCGAG CGCGACGGCA AGACCCAGGT GTGGGTGATC
GATACGCAGC ACAAGACCGT GGCCACCCGT GACGTGGCGC TGATCGACCG CACCGATGAC
AGCATCGTAC TGAGCGCCGG CGTGCAGCCC GGTGAGCGTG TGGTCACTGC CGGCGTCAAC
AGCCTCAAGC CTGGCCAGAA GGTCATCTTC GACGAGGATG CGCAATGA
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| Protein sequence | MKRLLLMLSA GVLLVGCSSE EEAPEAIRPV LSVKVEPQVQ SQLGRFAGSI QARFESTLGF
RVSGRIARRW LDVGAQVKPG DTLATLDPTD QQNQLRAAEG DLAKVQAQWI NAQADARRQQ
QLYDRGVGAQ AQLDIAQTNL KTTSAALEQA RSAVSQARDQ LDYSTLRTDH AAVITAWQAE
AGQTVTAGQA VVTLARPDVK EAVIDLPIDL AEQLSKGLTF TVASQLDPTI NTTASLRELE
PQADATTRTR RARLTLASTP AAFHLGTAIS VTLSSEVSPR SELPLSALLE RDGKTQVWVI
DTQHKTVATR DVALIDRTDD SIVLSAGVQP GERVVTAGVN SLKPGQKVIF DEDAQ
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