| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5073 |
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| Symbol | |
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| ID | 5191449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5700595 |
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| End bp | 5701425 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640589556 |
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| Product | sigma-54 factor interaction domain-containing protein |
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| Protein accession | YP_001270375 |
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| Protein GI | 148550273 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTTTC AAAACCCGTT CGGCCAGCCG CTACTGACCT TCCCCGAGCT GGACAAGAGC
CCGCTGAGCA TTCGTGCCAA GGCGCTGGTG TTCATCGACC CGCGCTCGCA GCAGCTGCGC
GAGGACCTTG AGCGCCTTGC GCTACAACCT TTGCCAGTGC TGATCCGTGG CGAAACCGGC
ACCGGCAAGG AGCTGCTGGC CCGGCAGATT CACCGTACCA GCGACCGTGG AGGGTTGTTC
GTGTCGGTCA ACTGCGCGGC CATCAGCCCC ACCTACGCCG ATGCCGAGCT GTTTGGCTAT
AGCGCGGGCA CCCATGGCGG TACGGCCAGC AGCCGCGCCG GCTGGTTCGG TTCGGCCAGC
GGCGGCACCT TGTACCTGGA CGAGATTGCC GACTTGCCGT TGGCCATCCA GGGCAAGCTG
CTGGCGGCCC TGGAAAACCG CGAGGTCACT CGGGTGGGCG CGCAGCAGCC ACAGCCGGTG
GATGTGCGCC TGGTAGCCGC CACCAGCATC GACCTGGCCC GTGTAGTACG TGCAGGGCGC
TTCAACGAGC GCCTGTACCA GTATCTGCGC GAGGGCGCGC TGGAGCTGCC GCCGCTGCGC
GAGCGGCCGG GCGATATCCT GCCGCTGGCC GAGTACTTCG TGGGCATCTA CAGCGTGCGC
CTGCAACGGC CACTGCCCTT GGTGAGCGAG GCGGCGCAGC GGGTGCTGGA GGCGCATTTC
TGGCCGGGCA ATACCCGCGA ACTGGAGAAC GTCATCCACT TTGCCTTGCT GGTCAATGAC
GGCGAAGAGA TCCTGCCAGA AGACCTCGAA CTGCCTGACC CCTCGCGTTA G
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| Protein sequence | MTFQNPFGQP LLTFPELDKS PLSIRAKALV FIDPRSQQLR EDLERLALQP LPVLIRGETG
TGKELLARQI HRTSDRGGLF VSVNCAAISP TYADAELFGY SAGTHGGTAS SRAGWFGSAS
GGTLYLDEIA DLPLAIQGKL LAALENREVT RVGAQQPQPV DVRLVAATSI DLARVVRAGR
FNERLYQYLR EGALELPPLR ERPGDILPLA EYFVGIYSVR LQRPLPLVSE AAQRVLEAHF
WPGNTRELEN VIHFALLVND GEEILPEDLE LPDPSR
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