| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5062 |
|---|
| Symbol | |
|---|
| ID | 5192574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5690006 |
|---|
| End bp | 5691235 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640589545 |
|---|
| Product | D-3-phosphoglycerate dehydrogenase |
|---|
| Protein accession | YP_001270364 |
|---|
| Protein GI | 148550262 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGA CTTCTCTCGA CAAGAGCAAG ATCCGGTTCC TTCTTCTTGA AGGTGTGCAC
CAGAACGCGG TCGATACTCT CAAGGCCGCC GGCTACACCA ACATCGAATA CCTCACTGGT
TCGTTGCCGG AAGCCGAGCT GAAGGAAAAG ATCGCTGATG CCCACTTCAT CGGCATCCGG
TCGCGTACGC AGCTCACTGA AGAGATCTTC GACTGCGCCA AGAAACTGGT CGCTGTTGGC
TGCTTCTGCA TCGGCACCAA CCAGGTTGAC CTGGAAGCTG CCCGCGCGCG CGGTATCGCC
GTGTTCAACG CACCGTACTC CAACACCCGT TCGGTGGCCG AGCTGGTGCT GGCCGAAGCC
ATCCTGCTGC TGCGCGGCAT CCCTGAGAAG AACGCCTCCT GCCACCGTGG TGGCTGGATC
AAGAGCGCGG CCAACTCGTT CGAAATCCGC GGCAAGAAAC TGGGCATCGT CGGCTACGGC
TCGATTGGTA CCCAGCTTTC GGTACTGGCT GAGAACATGG GCATGCAGGT GTACTTCTTC
GACCCGCTGA CCAAGCTGCC ACTGGGCAAC GCCGTGCAGG TCACCAGCCT GAACGAGCTG
CTGGGCCTGG CTGACATCGT CTCGCTGCAC GTGCCTGAAC TGCCCTCCAC CCAGTGGATG
ATCGGCGAGA AGGAAATCCG CTCGATGAAG AAGGGCGCGA TCCTGATCAA CGCCGCCCGT
GGCACCGTGG TCGAACTGGA CCACTTGGCC GCTGCCATCA AGGACAAGCA CCTGATCGGC
GCCGCCATCG ACGTGTTCCC GGTCGAGCCA CGCTCCAACG ACGAAGAGTT CGAAAGCCCG
CTGCGCGGCC TCGACAACGT GATCCTGACG CCGCACATTG GTGGTTCCAC CGCCGAAGCC
CAGGCCAACA TCGGTCTGGA AGTGGCCGAG AAGCTGGTCA AGTACAGCGA CAACGGTACC
TCGGTGTCCT CGGTCAACTT CCCGGAAGTG GCCCTGCCGG CTCACCCAGG CAAGCACCGT
CTGCTGCACA TCCACGAAAA CATCCCGGGC GTGCTCAGCG AGATCAACAA GGTCTTCGCC
GAGAACGGTA TCAACATCTC CGGTCAGTTC CTGCAGACCA ACGAGAAAGT CGGTTACGTG
GTAATCGACG TTGACGCCGA GTACTCGGAC CTTGCGCAAG AGAAACTGCA ACAGGTCAAG
GGCACCATCC GTTCCCGCGT CCTGTTCTAA
|
|---|
| Protein sequence | MSKTSLDKSK IRFLLLEGVH QNAVDTLKAA GYTNIEYLTG SLPEAELKEK IADAHFIGIR
SRTQLTEEIF DCAKKLVAVG CFCIGTNQVD LEAARARGIA VFNAPYSNTR SVAELVLAEA
ILLLRGIPEK NASCHRGGWI KSAANSFEIR GKKLGIVGYG SIGTQLSVLA ENMGMQVYFF
DPLTKLPLGN AVQVTSLNEL LGLADIVSLH VPELPSTQWM IGEKEIRSMK KGAILINAAR
GTVVELDHLA AAIKDKHLIG AAIDVFPVEP RSNDEEFESP LRGLDNVILT PHIGGSTAEA
QANIGLEVAE KLVKYSDNGT SVSSVNFPEV ALPAHPGKHR LLHIHENIPG VLSEINKVFA
ENGINISGQF LQTNEKVGYV VIDVDAEYSD LAQEKLQQVK GTIRSRVLF
|
|---|
| |