| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_5056 |
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| Symbol | |
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| ID | 5193484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5683202 |
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| End bp | 5684716 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640589539 |
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| Product | threonine dehydratase |
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| Protein accession | YP_001270358 |
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| Protein GI | 148550256 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.381788 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGAAC AGTACGTCAA GAAGATCCTC ACCTCGCGCG TCTATGACGT TGCCGTCGAA
ACCCCGTTGC AGAGCGCCGG GCAGCTGAGC AAGCGCCTGG GCAACCAGAT TCTGCTCAAG
CGCGAAGACC TGCAGCCAGT ATTCTCGTTC AAGATCCGCG GCGCCTATAA CAAACTGGCC
CAGCTGAGCC CGGAAGAACT GGCCCGTGGC GTGGTCACCG CCTCGGCCGG CAACCACGCC
CAAGGCCTGG CCCTGGCCGC GCGCGAAATG GGCATCAAGG CCACCATCGT GATGCCCAAG
ACTACTCCGG AGATCAAGGT CGAAGGCGTG CGCTCGCGCG GTGGCAAGGT GGTGCTGCAT
GGCGACTCGT TCCCTGAGGC ACTGGCCTAT TCGCTGAAAC TGGTCGATGA AAAGGGCTTC
GTCTACGTTC ACCCTTACGA CGATCCGCAC ACCATCGCCG GGCAGGGCAC CGTCGCCATG
GAAATCCTGC GCCAACACCC TGGCCGGCTG GATGCGATCT TCGTGCCGGT GGGCGGTGGC
GGCCTGATCG CCGGCATTGC TGCCTACGTG AAGTACCTGC GCCCGGAAAT CAAGGTAATC
GGTGTCGAGC CGGACGATTC CAACTGCCTG CAGGCGGCCA TGGCTGCCGG TGAGCGTGTG
GTGCTGCCGC AGGTCGGGCT GTTCGCCGAT GGCGTGGCGG TGGCGCAGAT TGGCCAGCAC
ACCTTTGATA TCTGCCGCCA CCATGTGGAC GAAGTCGTCA CTGTCAGTAC CGATGAAATC
TGCGCAGCAA TCAAGGATAT CTACGACGAT ACCCGCTCGA TCACCGAGCC TGCTGGCGCG
CTGGGTGTGG CGGGCATCAA GAAGTACGTC GAGCTATACG GCGTCAGCGG CCAGACCCTG
GTGGCCATCG ACTCCGGTGC CAACGTCAAT TTCGATCGCC TGCGCCATGT GGCCGAACGT
GCCGAGCTGG GTGAAAAGCG CGAGGCGATC ATCGCCGTGA CCATCCCTGA GCGCCCGGGT
AGCTTCAAGG CCTTCTGCGA AGCTATCGGC AAGCGTCAGA TCACCGAGTT CAACTACCGC
AAGCACACCT CTGACGAAGC GCATATCTTC GTTGGGGTGC AGACCCACCC GGAAAACGAC
CCCCGCGCAG CGCTGGTGCA GCAACTGACC GAGCAGGGCT TCCCGGTTAC CGATCTGACC
GACAATGAAC TGGCCAAGCT GCATATTCGT CATATGGTCG GCGGCCACTC GGCCGGTGCC
AGCGACGAAA TGGTGCTGCG CTTCGAATTC CCCGAGCGGC CGGGTGCGCT GTTCAACTTC
CTCAACAAGC TGGGCGGGCG CTGGAACATC TCGATGTTCC ACTACCGCAA CCATGGCGCG
GCTGATGGGC GCGTGGTGGC GGGGCTGCAG GTACCGGAGG ACGAACGTCA CCTGGTGCCG
GCAGCGCTGG CCAAGATCGG TTACCCGTAC TGGGACGAGA CCGAAAACCC GGCCTACAAA
CTGTTCCTGG GCTGA
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| Protein sequence | MLEQYVKKIL TSRVYDVAVE TPLQSAGQLS KRLGNQILLK REDLQPVFSF KIRGAYNKLA
QLSPEELARG VVTASAGNHA QGLALAAREM GIKATIVMPK TTPEIKVEGV RSRGGKVVLH
GDSFPEALAY SLKLVDEKGF VYVHPYDDPH TIAGQGTVAM EILRQHPGRL DAIFVPVGGG
GLIAGIAAYV KYLRPEIKVI GVEPDDSNCL QAAMAAGERV VLPQVGLFAD GVAVAQIGQH
TFDICRHHVD EVVTVSTDEI CAAIKDIYDD TRSITEPAGA LGVAGIKKYV ELYGVSGQTL
VAIDSGANVN FDRLRHVAER AELGEKREAI IAVTIPERPG SFKAFCEAIG KRQITEFNYR
KHTSDEAHIF VGVQTHPEND PRAALVQQLT EQGFPVTDLT DNELAKLHIR HMVGGHSAGA
SDEMVLRFEF PERPGALFNF LNKLGGRWNI SMFHYRNHGA ADGRVVAGLQ VPEDERHLVP
AALAKIGYPY WDETENPAYK LFLG
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