| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4947 |
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| Symbol | hemE |
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| ID | 5192334 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5561081 |
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| End bp | 5562145 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640589432 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_001270251 |
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| Protein GI | 148550149 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.136579 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCCC TGAAGAACGA TCGTTTCCTG CGTGCACTGC TCAAGCAACC CGTAGACGTC
ACCCCGGTGT GGATGATGCG CCAGGCCGGC CGCTACCTGC CGGAGTACCG CGCCAGCCGC
GCCAAGGCCG GTGACTTCAT GAGCCTGTGC ATGAACCCGC AGTTCGCCTG CGAGGTCACC
CTGCAGCCGC TGGACCGCTA CCCGCTGGAC GCAGCGATCC TGTTCTCGGA CATCCTTACC
ATTCCCGATG CCATGGGCCT GGGCCTGTAC TTCGAAACCG GCGAAGGCCC GCGTTTCAAG
AAGGTCATCA GCACCCCCGC TGACATCGAA GCGCTGCCAG TCCCGGACCC ACAGAAAGAC
CTCGGCTACG TGATGGACGC GGTCAGCACC ATTCGCCGTG AGCTCAATGG CCGTGTGCCG
TTGATCGGCT TCTCCGGCAG CCCGTGGACC CTGGCCACCT ACATGGTCGA AGGCGGCTCG
TCGAAGGACT TCCGCAAGAC CAAGGCCATG GCCTACGACA ACCCGCAAGC CCTGCACCTG
CTGCTGGACA AGCTGGCCCA GTCGGTCACC AGCTACCTTA ACGGCCAGAT CCTGGCCGGC
GCCCAGGCCG TGCAGATCTT CGACACCTGG GGCGGCAACC TGTCGGCGGC GGCCTACCAG
GAGTTCTCAC TGGCCTACAT GCGCAAGATC GTCAGCGGCC TGATCCGCGA GCACGAGGGG
CGCAAGGTGC CGGTGATCCT GTTCACCAAG AATGGTGGTT TGTGGCTGGA AAGCATCGCC
GACGCAGGTG CCGACGCACT GGGCCTGGAC TGGACCTGCG AGATTGGCGA CGCCCGCCGC
CGCGTGGGTG ACAAAGTAGC CTTGCAAGGC AACATGGATC CGACCGTGCT TTACGCCAAG
CCCGAGGCCA TTCGCAAGGA AGTGGCGCGC ATCCTGGCCA GCTACGGCCA TGGCACCGGT
CATGTGTTCA ACCTTGGCCA CGGCATTACC CCGGAAGTCG ACCCGGAGCA TGCCGGCGTA
TTCATCAATG CCGTTCACGA GCTGTCGGCG CAGTATCACC AGTGA
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| Protein sequence | MTALKNDRFL RALLKQPVDV TPVWMMRQAG RYLPEYRASR AKAGDFMSLC MNPQFACEVT
LQPLDRYPLD AAILFSDILT IPDAMGLGLY FETGEGPRFK KVISTPADIE ALPVPDPQKD
LGYVMDAVST IRRELNGRVP LIGFSGSPWT LATYMVEGGS SKDFRKTKAM AYDNPQALHL
LLDKLAQSVT SYLNGQILAG AQAVQIFDTW GGNLSAAAYQ EFSLAYMRKI VSGLIREHEG
RKVPVILFTK NGGLWLESIA DAGADALGLD WTCEIGDARR RVGDKVALQG NMDPTVLYAK
PEAIRKEVAR ILASYGHGTG HVFNLGHGIT PEVDPEHAGV FINAVHELSA QYHQ
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