| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4934 |
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| Symbol | |
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| ID | 5195362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5541381 |
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| End bp | 5543384 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640589419 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001270238 |
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| Protein GI | 148550136 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.205263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCTG CCTCACTTAC CAAGCCCCCC GCCGAGAGGG TACGGGTCAA CCGCGTGGTG
TTCTTCACCT CCGCGCTGAT GATCCTTGTT CTGACTGCCT TGCTGATCGC TGTACCCGAA
ACCGCCGGCC AGGTGCTGGG CGTGGCCCAG AAGTGGCTGA CGCGCACCTT TGGCTGGTAC
TACATGCTGG TCATCTGCGG ATACCTGCTG TTCGTCGTCT ACCTGGCTTT CTCCGACTAC
GGCAGCCTCA AGCTGGGTGG CAAGGACGAC CAGCCTGACT TCAGCTACGG CGCCTGGGCC
GGCATGCTGT TCTCGTCCGG TATCGGTATT TCGCTGCTGT ACTTCGGCGC CTCCGAGCCC
CTGGACCACT ACTTCAACCC ACCGGAGGGC ACCCCGGCCA GCCTCGAGGC CGCGCGCCAG
GGCCTGCAGC TGACCTTCCT GCACTGGGGC CTGCACGGCT GGGCGATCTA TGCCCTGGTG
GGCCTGGCGG TGGGTTACTT TGCCTACCGC CACAACCAGC CGCTGGCACT GCGCTCGGCG
CTGTACCCGC TGGTGGGCGA GCGTTGGGTC AAGGGCGCTG CCGGCAACGC TGTCGACATC
TTCGGCATGT TCGTCACCCT GCTGGGCCTG GTGACCAACC TGGGCATCGG CGCGATGCAG
GTGTCGTCCG GGCTGGAATA CCTGTTCGGC ATGGACCACA GCAAGACCAA CCTGCTGGTG
GTGATCCTGG TCATGGCTGG CGTGGCTACC GTGGCAGCGG TATCGGGTGT GGAAAACGGC
ATTCGCCGCC TGTCCAACCT GAACATCATG CTGTTCAGCG GCCTGTTGAT CTTCGTGCTG
CTGGGCGGCG AAACCCTGCA CCTACTCAAC GGCTTCGTGC AGAACGTCGG CGACTACCTG
AACGGCATCG TGCTGAAAAC CTTCGACCTC TATGTGTATG AAGGCGAAGC CGGCAAGTCG
GAGCGCTGGC TGGGCCTGTG GACCGTGTTC TACTGGGCCT GGTGGATCTC CTGGGGCCCA
TTCGTCGGCA TGTTCATTGC GCGTATTTCC AAGGGCCGCA CCGTGCGCCA ACTGGTGATG
GGTGTGCTGC TGATCCCGCT GGGCTTCACC CTGGCCTGGC TGTCGATCTT CGGCAACACC
GCACTGGACC TGGTGATCAA CCAGGGCGCC GTGGAGCTGG GCAAGACTGC GCTGGAACAG
CCATCGATGT CGATCTACCA GCTGCTGGAA TACTTCCCGG CAGCCAAGAT CGTCATTGGT
GTGGCAGTGT TCGTCGGTTT CGTGCTGTTC CTCACACCGG CCGACTCCGG CGCGGTGATG
ATGGCCAACC TGTCGTGCAC AGGCGGCAAG GTCGACGAGG ATGCCCCGCA CTGGATGGTG
GTGTTCTGGT CCGTGGTGAT CACCCTGGTC ACGATCGGCC TGCTGTTTGC CGGTAACTTC
GAAGCCATGC AGACCATGGT CGTGCTGGCG GGCCTGCCAT TCTCGGTGGT GCTGGTGCTG
TTCATGTTCG GCCTGTACAA GGCCATGAAG CAGGACGTGG TGATCGAGCA GGAGCGCGCC
GAACTGGCCG CCCGTGGCCG TCGCGGCTTT AGCGAGCGCC TGACCCAGCT GGAACTGCAG
CCGACCCAGG CCGTGGTGCA GCGTTTCATG GACAAGCAGG TCAGCCCGGC GTTGAAAGAA
GCCGCTGCAC AGCTGCAGAC GCAGGGCTTC GAGGTGGAAA CCCGCGTTGG CCAGTCGCGC
AACCTGATGG GCTTGCGGGT GATGATGGAA GAAGGCAACC CTTTCGTCTA CGAAGTGAGC
CTTGACGGCT ATATGGCCGC GTCGAGCGAG GCGCCGGTCG AGGGTGAGCC TGAACTGCGC
CAGCGCTTCT ACCGCGCCGA GGTCTACCTG CATGACGGCA GTCAGGAGTA CGACCTGATG
GGCTTTGCCC CAGACCAGAT CGTGCGTGAT GTGCTCGATC AGTTCGAGAG CCATCGCCAG
GTGCTTGGCC GCGTCTATAG CTGA
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| Protein sequence | MSSASLTKPP AERVRVNRVV FFTSALMILV LTALLIAVPE TAGQVLGVAQ KWLTRTFGWY
YMLVICGYLL FVVYLAFSDY GSLKLGGKDD QPDFSYGAWA GMLFSSGIGI SLLYFGASEP
LDHYFNPPEG TPASLEAARQ GLQLTFLHWG LHGWAIYALV GLAVGYFAYR HNQPLALRSA
LYPLVGERWV KGAAGNAVDI FGMFVTLLGL VTNLGIGAMQ VSSGLEYLFG MDHSKTNLLV
VILVMAGVAT VAAVSGVENG IRRLSNLNIM LFSGLLIFVL LGGETLHLLN GFVQNVGDYL
NGIVLKTFDL YVYEGEAGKS ERWLGLWTVF YWAWWISWGP FVGMFIARIS KGRTVRQLVM
GVLLIPLGFT LAWLSIFGNT ALDLVINQGA VELGKTALEQ PSMSIYQLLE YFPAAKIVIG
VAVFVGFVLF LTPADSGAVM MANLSCTGGK VDEDAPHWMV VFWSVVITLV TIGLLFAGNF
EAMQTMVVLA GLPFSVVLVL FMFGLYKAMK QDVVIEQERA ELAARGRRGF SERLTQLELQ
PTQAVVQRFM DKQVSPALKE AAAQLQTQGF EVETRVGQSR NLMGLRVMME EGNPFVYEVS
LDGYMAASSE APVEGEPELR QRFYRAEVYL HDGSQEYDLM GFAPDQIVRD VLDQFESHRQ
VLGRVYS
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