| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4925 |
|---|
| Symbol | |
|---|
| ID | 5192502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5529203 |
|---|
| End bp | 5529664 |
|---|
| Gene Length | 462 bp |
|---|
| Protein Length | 153 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640589410 |
|---|
| Product | RNA methyltransferase |
|---|
| Protein accession | YP_001270229 |
|---|
| Protein GI | 148550127 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.61078 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCACG TCATCCTTTT TCAACCAGAA ATTCCGCCGA ATACCGGCAA CATCATTCGT
CTATGCGCCA ACAGCGGCTG TGCCCTGCAC CTGATCGAAC CCATCAGTTT CGAACTGGAT
GACAAGCGCC TGCGCCGCGC AGGGCTGGAC TACCACGAGT ATGCCACGCT CAAGCGCCAC
GAGAGCTTGG CCGGATGCCT GGAAAGCCTT GGCAACCCAC GGTTGTTCGC CTTTACCACC
AAGGGCTCGC ACCCGTTCCA CGAAGTGGCC TTCCAGCCGG GCGACGCCTT CTTGTTCGGG
CCAGAGAGCC GCGGGTTGCC GGCCGAGGTG CTGGATAGCC TGCCGGCCGA GCATCGCCTG
CGCCTACCGA TGCGGCCGGG GTGCCGTAGC CTGAACCTGT CCAATACCGT GGCGGTGACG
GTGTATGAGG CGTGGCGGCA GAACGGGTTT GCCGGGAGCT GA
|
|---|
| Protein sequence | MFHVILFQPE IPPNTGNIIR LCANSGCALH LIEPISFELD DKRLRRAGLD YHEYATLKRH
ESLAGCLESL GNPRLFAFTT KGSHPFHEVA FQPGDAFLFG PESRGLPAEV LDSLPAEHRL
RLPMRPGCRS LNLSNTVAVT VYEAWRQNGF AGS
|
|---|
| |