Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4868 |
Symbol | |
ID | 5193183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5462198 |
End bp | 5463103 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640589353 |
Product | TonB family protein |
Protein accession | YP_001270172 |
Protein GI | 148550070 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0170221 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCTGC CCGCTGACGT CCCTGCCGAC CTGCTGCCTC CCCGTGTTCG CCCTGCGGAC CGGCTTGGCT TCACCCTGTT CCTGGCTGCG CTGGTGCACC TGGCGCTGAT CCTTGGCGTC GGCTTCACCG TGGTCAAGCC TGCCGAAATC CGCCACACCA TGGACATCAC CCTGGCCACC TTCAAGAGCG AGAAACCGCC CGAGAAGGCT GACTTCCAGG CCCAGGACAA CCAGCAAGGC AGCGGCACCC TGGACAAGAA AGCGGTGCCC AAGACCACCG AGCTGGCGCC GTTCCAGGAC AGCAAGATCA ACAAGATCAC CCCACCGCCT GCGGCCAGGC CCGAGGTGGT CCCACCCCCT CCCCCGAAAA AGTCGGCGGT GGTGACTACT GCGCCCAAGC CGCACAAGGT CGAACCCAAA CCCAAGGAAA GCAAAGCACA GCCCAAGCCA GCCACACCGA CGCCGGACTT CGACAGCTCG CAGTTGTCCA GCCAGATCGC CAGCCTGGAA GCGGAGCTGT CCAACGAACA GCAGATGTAC GCCAAGCGCC CGCGCATCCA TCGCCTGAAC GCCGCGTCGA CCATGCGCGA CAAGGGCGCC TGGTACAAGG AAGAGTGGCG CAAGAAGGTC GAGCGCGTGG GTAACCTGAA CTACCCCGAT GAAGCACGCC GACAGCAGAT CTACGGCAAC TTGCGCATGA TGGTGTCGAT CAACCGCGAT GGCTCGCTGT ACGAGGTACT GGTGCTGGAA TCGTCCGGGC AGCCCGTGCT GGATCAGGCG GCGCAGCGCA TCGTGCGGCT GGCCGCGCCG TTTGCACCGT TTACCGGTGA TCTGGCCGAG TTCGACCGGC TGGAGATCAT CCGCACCTGG CGCTTTGCCC GTGGGGACCG TTTGTCCAGT AATTGA
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Protein sequence | MTLPADVPAD LLPPRVRPAD RLGFTLFLAA LVHLALILGV GFTVVKPAEI RHTMDITLAT FKSEKPPEKA DFQAQDNQQG SGTLDKKAVP KTTELAPFQD SKINKITPPP AARPEVVPPP PPKKSAVVTT APKPHKVEPK PKESKAQPKP ATPTPDFDSS QLSSQIASLE AELSNEQQMY AKRPRIHRLN AASTMRDKGA WYKEEWRKKV ERVGNLNYPD EARRQQIYGN LRMMVSINRD GSLYEVLVLE SSGQPVLDQA AQRIVRLAAP FAPFTGDLAE FDRLEIIRTW RFARGDRLSS N
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