| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4868 |
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| Symbol | |
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| ID | 5193183 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5462198 |
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| End bp | 5463103 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640589353 |
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| Product | TonB family protein |
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| Protein accession | YP_001270172 |
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| Protein GI | 148550070 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0170221 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCTGC CCGCTGACGT CCCTGCCGAC CTGCTGCCTC CCCGTGTTCG CCCTGCGGAC
CGGCTTGGCT TCACCCTGTT CCTGGCTGCG CTGGTGCACC TGGCGCTGAT CCTTGGCGTC
GGCTTCACCG TGGTCAAGCC TGCCGAAATC CGCCACACCA TGGACATCAC CCTGGCCACC
TTCAAGAGCG AGAAACCGCC CGAGAAGGCT GACTTCCAGG CCCAGGACAA CCAGCAAGGC
AGCGGCACCC TGGACAAGAA AGCGGTGCCC AAGACCACCG AGCTGGCGCC GTTCCAGGAC
AGCAAGATCA ACAAGATCAC CCCACCGCCT GCGGCCAGGC CCGAGGTGGT CCCACCCCCT
CCCCCGAAAA AGTCGGCGGT GGTGACTACT GCGCCCAAGC CGCACAAGGT CGAACCCAAA
CCCAAGGAAA GCAAAGCACA GCCCAAGCCA GCCACACCGA CGCCGGACTT CGACAGCTCG
CAGTTGTCCA GCCAGATCGC CAGCCTGGAA GCGGAGCTGT CCAACGAACA GCAGATGTAC
GCCAAGCGCC CGCGCATCCA TCGCCTGAAC GCCGCGTCGA CCATGCGCGA CAAGGGCGCC
TGGTACAAGG AAGAGTGGCG CAAGAAGGTC GAGCGCGTGG GTAACCTGAA CTACCCCGAT
GAAGCACGCC GACAGCAGAT CTACGGCAAC TTGCGCATGA TGGTGTCGAT CAACCGCGAT
GGCTCGCTGT ACGAGGTACT GGTGCTGGAA TCGTCCGGGC AGCCCGTGCT GGATCAGGCG
GCGCAGCGCA TCGTGCGGCT GGCCGCGCCG TTTGCACCGT TTACCGGTGA TCTGGCCGAG
TTCGACCGGC TGGAGATCAT CCGCACCTGG CGCTTTGCCC GTGGGGACCG TTTGTCCAGT
AATTGA
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| Protein sequence | MTLPADVPAD LLPPRVRPAD RLGFTLFLAA LVHLALILGV GFTVVKPAEI RHTMDITLAT
FKSEKPPEKA DFQAQDNQQG SGTLDKKAVP KTTELAPFQD SKINKITPPP AARPEVVPPP
PPKKSAVVTT APKPHKVEPK PKESKAQPKP ATPTPDFDSS QLSSQIASLE AELSNEQQMY
AKRPRIHRLN AASTMRDKGA WYKEEWRKKV ERVGNLNYPD EARRQQIYGN LRMMVSINRD
GSLYEVLVLE SSGQPVLDQA AQRIVRLAAP FAPFTGDLAE FDRLEIIRTW RFARGDRLSS
N
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