Gene Pput_4859 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4859 
Symbol 
ID5194583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5450513 
End bp5451232 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content66% 
IMG OID640589344 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001270163 
Protein GI148550061 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.771335 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0487283 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACTGT CCCGCTTCTT CATCGACGCC CCCCTGAGCC TTGGCGAGCA CGACCTGCCC 
GAGGCCCAGG CCCATTACAT TGGCCGCGTG CTGCGCATGG CACCCGGCGA CGCCGTGCAG
CTGTTCGATG GCAGCGGCCA GGAATACCGT GGTCAGTTGC TCGAGGTGGG CAAGAAAACT
GTCCGCGTCA GCCTTGACCA GGCCTTTGCC GGCCAGGCCG ATTCACCGCT GCATGTGCAC
CTGGGCCAGG GCCTCTCCCG TGGCGAGCGC ATGGACTGGG CGATCCAGAA GGCCACTGAG
CTTGGTGCCA ACGAAATCAC CCCGATCGTC AGCGAACGCT GCGAAGTGCG CCTGAAAGAC
GAACGCGCCG ACAAGCGCCT GGCCCACTGG CGCCAAGTGG CGATCAGCGC CTGTGAACAA
TGCGGGCGTT CTACCTTGCC AGTCATTCAC CCACCCGTGC CCCTGGCGGA ATGGTTGAGC
AGCACCAAGG CTGACCTGAA ACTGGTCCTG CACCCGGTGG CCGAGCCGCT CACCAGCCAT
GAAAAGCCCG CAACACTGGC CTTCGTGATC GGCCCCGAAG GCGGCCTTAG CGAGGCCGAA
GTCGAGCAGG CCAAAGCCGC CGGCTTCCAC GCAGCACGCC TTGGCCCGCG CGTGCTGCGC
ACCGAGACCG CGCCGGTGGT GGCGCTGTCG GTGGCACAGC AGTTGTGGGG CGATTTTTAA
 
Protein sequence
MRLSRFFIDA PLSLGEHDLP EAQAHYIGRV LRMAPGDAVQ LFDGSGQEYR GQLLEVGKKT 
VRVSLDQAFA GQADSPLHVH LGQGLSRGER MDWAIQKATE LGANEITPIV SERCEVRLKD
ERADKRLAHW RQVAISACEQ CGRSTLPVIH PPVPLAEWLS STKADLKLVL HPVAEPLTSH
EKPATLAFVI GPEGGLSEAE VEQAKAAGFH AARLGPRVLR TETAPVVALS VAQQLWGDF