| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4856 |
|---|
| Symbol | |
|---|
| ID | 5194463 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5446318 |
|---|
| End bp | 5448177 |
|---|
| Gene Length | 1860 bp |
|---|
| Protein Length | 619 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640589341 |
|---|
| Product | amine oxidase |
|---|
| Protein accession | YP_001270160 |
|---|
| Protein GI | 148550058 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1231] Monoamine oxidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.314626 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.125904 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCTG CTTGGGTGCG CCTGTGCGCG TTGGTATTGA TTGGTGTGTC CAGCGGCGCT
GCGCTGGCAA AAGACAAGAC GCCCACAGCG ATTGTCGTGG GGGGTGGCCT GGCAGGCCTG
ACGGCAGCCT ACGAGCTGCA GAACAAAGGC TGGCAGGTGA CCCTGCTGGA GGCCAAGGCG
GGCATGGGCG GGCGTTCGGG CCTGGCCACC AGCGAGTGGA TCGGCAACGC CAAGGCACAG
CCGGTGCTCA ACCAGTACCT CGACCGTTTC AAACTTGAAA CACTGCCGGC GCCCGAGTTC
GTGCGTACCC CGGGTTACTT GATTGACGGC GAATACTTCA GCGCCAGCGA CCTGGCCACC
AAGCAACCGG CCACTGCTGA GGCGCTCAAG CGTTACGAGA AAACCCTTGA TGACCTGGCC
CGTTCGATCG ATGACCCGCT GAACCCGCAG GCAACCAGCA CGCTGTTCGC CCTTGACCAG
ATCAACGTCT CCACCTGGCT GGACAAACTG CAACTGCCGG CCACCGCCCG TCAGTTGATC
AATCAGCAGA TCCGCACCCG CTACGATGAA CCGTCGCGCC TGTCGCTGCT GTACTTCGCC
CAGCAGAACC GCGTGTACCG CGGCGTCAGC GACCGCGACC TGCGCGCCGC GCGCCTGCCC
GGTGGCAGCC CGGTGCTGGC CCAGGCTTTC GTCAAGCAGT TGAAAACCAT CAAGACCAGC
TCGCCGGTTA CCGCCATTGT CCAGGACAAG GATGGTGTCA CGGTAAAAGT CGGCAGCGTC
GGCTACAAGG CGGATTATCT GGTCATGGCT GTGCCCCTGC GCGCGCTGGC CAAGATTCAG
ATGACCCCTG GCCTGGACAG CCAACACCTG GCGGCGCTCA AGGGCACCAA CTATGGTTGG
CGCGACCAGA TCATGCTCAA GTTCAAGAAA CCCGTATGGG AAAGCCGCGC ACGCATGTCG
GGCGAAATCT TCAGTAACGC CGGCCTCGGC ATGCTGTGGG TCGAACCGGC GCTCAAGGGT
GGTGCCAATG TGGTGATCAA CCTGTCCGGC GATAACGCTC GCCTGCTGCA GGCGTTTGGT
GAAAAGCAGA TGGTCGACCA GGTGTTGATC CGTCTGCATG CGTTCTACCC ACAGGCCCGT
GGTGCTTTCA CCGGTTACGA GGTCAAGCGA TACAGCGCGG ACGCTGGCAC GGGTGGTGCC
TACCTGGCCT ACGGTCCGGG GCAGATCAGC AAATACTGGC GCCTGTGGGA ACGTCCGGTG
CAGCGCATGA CCTTTGCCGG TGAGCACACG GATGCCCTGT ACCCGGGCAC TCTGGAAGGC
GCCCTGCGCA GTGGCCAGCG TGCGGCCAGC CAGGCACAGG ACCTGTTGGC CGGCAAGTCG
TTCGACCCGG CCAAGGCGCT GCCGGTTGCG GCGGCGGCAG GTGCGGTGGC CGCCAAGGAG
AGCAAGGGCG GATTCTTCTC CAATATGTTC GGCGGTTCGT CCGACAAGGG CGACAAGGCT
GACAAGGCGC CGGCCAAAGC TGAGCCTAAG CAGGCCGAAG AGGCCAAGCA GGACAAGCCA
GGCTTCTTCA AGCGCCTGTT TGGCGGGGCG CAAACGCCAG AGGCGAAGGC TGAGCCAATT
GCCAAGGCTG AGGAAGTGGC GCCTGCACCT GCGCCCGCTC CACAGGCGGC TCCGGCTCCT
GCAGCGCCTG CGCCTGTGGC CAAGGAAACG GCTGCCAAGC CTGCGGCAAC CAAAGCCGCT
CCCGCCAAGC ATGCGCCCGC GCACAAGCCA GCCCACAAGC CTGCCGAGAC GAAGAAGGCG
ACAGCCAAGT CGGAGCCTGC GAAGAAGGCT GTAACCAATA CCCAGGCCAA GGCGGGCTGA
|
|---|
| Protein sequence | MAAAWVRLCA LVLIGVSSGA ALAKDKTPTA IVVGGGLAGL TAAYELQNKG WQVTLLEAKA
GMGGRSGLAT SEWIGNAKAQ PVLNQYLDRF KLETLPAPEF VRTPGYLIDG EYFSASDLAT
KQPATAEALK RYEKTLDDLA RSIDDPLNPQ ATSTLFALDQ INVSTWLDKL QLPATARQLI
NQQIRTRYDE PSRLSLLYFA QQNRVYRGVS DRDLRAARLP GGSPVLAQAF VKQLKTIKTS
SPVTAIVQDK DGVTVKVGSV GYKADYLVMA VPLRALAKIQ MTPGLDSQHL AALKGTNYGW
RDQIMLKFKK PVWESRARMS GEIFSNAGLG MLWVEPALKG GANVVINLSG DNARLLQAFG
EKQMVDQVLI RLHAFYPQAR GAFTGYEVKR YSADAGTGGA YLAYGPGQIS KYWRLWERPV
QRMTFAGEHT DALYPGTLEG ALRSGQRAAS QAQDLLAGKS FDPAKALPVA AAAGAVAAKE
SKGGFFSNMF GGSSDKGDKA DKAPAKAEPK QAEEAKQDKP GFFKRLFGGA QTPEAKAEPI
AKAEEVAPAP APAPQAAPAP AAPAPVAKET AAKPAATKAA PAKHAPAHKP AHKPAETKKA
TAKSEPAKKA VTNTQAKAG
|
|---|
| |