| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4853 |
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| Symbol | |
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| ID | 5190648 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5442932 |
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| End bp | 5444815 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640589338 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001270157 |
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| Protein GI | 148550055 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.282261 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0691248 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCTTTG CTTCCCTCGG TCTCTCCGAG GCTCTTGTCC GCGCTATCGA GGCTGCGGGC
TACACCCAGC CGACCCCCGT GCAACAGCGG GCCATTCCCG CCGTGTTGCA AGGCCGCGAC
CTGATGGTTG CCGCACAGAC AGGTACGGGT AAAACCGGCG GCTTCGCCCT GCCGATTCTC
GAGCGCCTGT TCCCGGCCGG CCATCCCGAC AAATCGCAGC GCCATGGCCC GCGCCAGCCT
CGCGTCCTGG TCCTGACACC GACCCGCGAA CTGGCAGCCC AGGTGCATGA CAGTTTCAAA
GTCTATGCCC GTGACCTGCC ACTGGTCAGC GCCTGCATCT TCGGCGGCGT TGGCATGAAC
CCGCAGATCC AGGCCATTGC CAAAGGCGTT GATGTGCTGG TCGCCTGCCC AGGCCGCCTG
CTCGACCTGG CCGGCCAAGG CAAGGTCGAC CTGGCCCACG TGGAAATCCT GGTACTTGAT
GAAGCCGATC GCATGCTCGA CATGGGCTTC ATCCACGACG TCAAGAAGGT GCTCGCCCGC
CTGCCGGCCA AGCGGCAGAA CCTGCTTTTC TCGGCCACCT TCTCCAAGGA CATCACCGAC
CTCGCCGACA AGCTCCTGCA CAACCCGGAG CGTATCGAGG TCACCCCGCC GAACACCACC
GTCGAGCGTA TCGAGCAGCG GGTGTACCGG CTGCCTGCCA GCCACAAGCG TGCCCTGCTG
GCGCACCTGA TCACCTTGGG CGCCTGGGAA CAGGTGTTGG TGTTCACCCG AACCAAGCAC
GGTGCCAACC GCCTGGCCGA GTACCTGGAA AAGCAAGGCC TGACCGCCGC CGCGATCCAC
GGCAACAAGA GCCAGAACGC CCGCACCAAG GCTTTGGCCG ACTTCAAGGC CAACAGCGTG
CGCGTACTGG TCGCCACCGA CATCGCTGCC CGCGGCCTGG ACATCGACCA GTTGCCCCAC
GTTGTCAACT TCGAGCTGCC GAATGTCGAG GAAGACTACG TCCACCGCAT TGGCCGTACC
GGCCGTGCCG GTCGTTCGGG CGAAGCTATT TCCCTGGTCG CACCAGATGA AGAAAAGCTG
CTCAAGAGCA TCGAGCGGGT GACCAAGCAG CGCATCGCGG ATGGCGACCT GATGGGCTTC
GACGCCAGCC AGGTCGAAGC CGAGAAGCCT GAAACACGCG AGCGCCCGCA AAACAACGGC
CGCGGTGGCC GCAACCAGCA AGCCCGCGGC GAAGGTGCCA AAGACAGCAA CGGCGGCCGC
AAGGACAAAG GCAAGGACAA AGGCAAAGCC AGGCAGCAAG CTGCGGCCAA GCCGGACGAC
AAGGAAAAGA GCGGCGACAA GCAGCAGCAG CCGCGCAAGC CGCGTGACAA GAAGCCACGC
CCACAGCAGG CCAGCAATAA CGGCGTGCCG AAACCGCCAG CAGACCGCGA CCCGGAAGAG
TTCCTGGACG ACGAGGTCGA TAACTTCGGT AACCGCGCCG ACTATGTCAG TCCGTACCAG
GGCAAAAACC AGGGCCGCAA CCGTCGCCCA GGTGGTGCTG GCCAAGGTCA GGGGCAAGGC
AATGGTCAAC GCAGCAACGC TGGCGGCCAA GGCCAAGCCC GCAATGGCGG CCAGCCACGC
AGTGGTGGCG GAGAAAAACG CCCGCCCCGC GCCAACAACG GTGGCGGTGC CCGTCGTGAT
GGCGGCGGTG GCCGTGGTCG CCCTGCGCGT GACGATGCTG CCCGGCAAGA GCCGGCCGTG
CGCAACCCGC GTCAGCCGGA AAAACAGCCA GTGATCATTC GCAAGGAGTC CAAACTGGAC
CGCTTCCCGA CGCCTGAGCA ACTGGATGAC CTGCCAAGCC GCCCACGCGG TGAGCGCCCG
GCGCTGCTGA CCCGCAAGGG CTGA
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| Protein sequence | MSFASLGLSE ALVRAIEAAG YTQPTPVQQR AIPAVLQGRD LMVAAQTGTG KTGGFALPIL
ERLFPAGHPD KSQRHGPRQP RVLVLTPTRE LAAQVHDSFK VYARDLPLVS ACIFGGVGMN
PQIQAIAKGV DVLVACPGRL LDLAGQGKVD LAHVEILVLD EADRMLDMGF IHDVKKVLAR
LPAKRQNLLF SATFSKDITD LADKLLHNPE RIEVTPPNTT VERIEQRVYR LPASHKRALL
AHLITLGAWE QVLVFTRTKH GANRLAEYLE KQGLTAAAIH GNKSQNARTK ALADFKANSV
RVLVATDIAA RGLDIDQLPH VVNFELPNVE EDYVHRIGRT GRAGRSGEAI SLVAPDEEKL
LKSIERVTKQ RIADGDLMGF DASQVEAEKP ETRERPQNNG RGGRNQQARG EGAKDSNGGR
KDKGKDKGKA RQQAAAKPDD KEKSGDKQQQ PRKPRDKKPR PQQASNNGVP KPPADRDPEE
FLDDEVDNFG NRADYVSPYQ GKNQGRNRRP GGAGQGQGQG NGQRSNAGGQ GQARNGGQPR
SGGGEKRPPR ANNGGGARRD GGGGRGRPAR DDAARQEPAV RNPRQPEKQP VIIRKESKLD
RFPTPEQLDD LPSRPRGERP ALLTRKG
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