Gene Pput_4852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4852 
Symbol 
ID5190647 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5441925 
End bp5442713 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content63% 
IMG OID640589337 
Productextracellular solute-binding protein 
Protein accessionYP_001270156 
Protein GI148550054 
COG category[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms 
COG ID[COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.157097 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0489444 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCACATA TCGCCCGTCT GTTCTGGATC CTCCTGCTCG TTTGCCTGAG CCCGTTGGCT 
CTGGGCGAAC GCTTGCGCCT GGTAACCGAC GACTGGGCAC CTTATGTGTT TCAGCACAAC
GGCCAACCGC GCGGCATCGA CTACGAAGTC GCCAGCCAGG TCTTCGCACG CCTCGGCGTC
GAGGTGGAGT GGCAATTCCT GCCTTGGAAG CGCTGCTTGG CGATGGCTGA GCAGGGCCTG
GCCGATGGCA TTCTCGACAT CTTCCAGACG GACGCGCGCC AACCCTACAT GGTGTATGGC
TCCGAACCTA TGTCGGAGGT CGAATTCGTC CTGTTCCAAA GCCGCTCGCG CCGCCATGCC
GTCACCCACC TGGACGACCT CGCCGGCCTC ACCGTCGGCA CCTCGCCCGG CTACGCCTAC
GGTAAAGCGT TCACCGAGGC CCCGCACTTC AAGCGCGAAG CCGCACCCAC CCACGAAGCC
AACTTCGGCA AGCTGGTGCT GGGCCGTATC GACCTGGCGA TCACCGACCG CAGGGTCGGG
CATTACCTGC TCCGCCAGCT CGGCCTGCAA CAGCAAGTCG AAGAACTGCC GCTGGTAGTC
AGCCGCCAGG CGCAGTATTT GGGCCTGGTG CGCAAGCCTG GGCGCGAGGC ACTGGCCGTG
GCCTTTGCCG AAGAGCTGCA GCGGTTCAAG CAGGAACCGG CCTATGCAGC GATCAGCAAC
CGCTATACAA GCGACACTGG AAACATTCTC AACGCCGTTG AGCAGCAGGA AAGCAGCACA
GCGCGATAG
 
Protein sequence
MPHIARLFWI LLLVCLSPLA LGERLRLVTD DWAPYVFQHN GQPRGIDYEV ASQVFARLGV 
EVEWQFLPWK RCLAMAEQGL ADGILDIFQT DARQPYMVYG SEPMSEVEFV LFQSRSRRHA
VTHLDDLAGL TVGTSPGYAY GKAFTEAPHF KREAAPTHEA NFGKLVLGRI DLAITDRRVG
HYLLRQLGLQ QQVEELPLVV SRQAQYLGLV RKPGREALAV AFAEELQRFK QEPAYAAISN
RYTSDTGNIL NAVEQQESST AR