| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4841 |
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| Symbol | ligB |
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| ID | 5191826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5430394 |
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| End bp | 5432094 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640589326 |
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| Product | NAD-dependent DNA ligase LigB |
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| Protein accession | YP_001270145 |
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| Protein GI | 148550043 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.596764 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTACC TGTTGTTGTT CGCCCTGCTA TTTGCACTGA ACGCCCCATT GGCCAGGGCT
GCCTCATGCC CACAGTGGAG CCCGCAACAG GCCAAGGCCG AAGTTGCGCA ACTCCGCGCC
ACGCTTGCCC GATGGGACGA GCACTACCAT CGCCAGGGCA TAGCCCTGGT GGCCGACGAA
CTGTACGACC AGAGCCGCGA GCGCCTGAAC CACCTGCAGC AGTGCTTCGC GGTTGGCACC
AGCCCCTCCC CTCTGGCCAG CGCTCGCGGC CCGGTCCCCC ACCCCGTGCC GCATACCGGC
GTCGACAAGC TGGCAGACCG CCAGGCCGTG GCGCGATGGA TGGCCGGCAA GAGCGGCGTG
TGGGTACAGC CCAAGGTCGA CGGCGTAGCC GTTTCCCTCA CCTACCAACA GGGCCGATTG
GTGCAGCTGA CCAGCCGGGG GGACGGCGTA AACGGCCATG ACTGGAGCCG ACACATCCCG
CAACTCGACG CTGTCACTCG GCAGTTGCCT GAGGCGCTCG ACCTGCACTT GCAAGGTGAG
CTGTATCTGC GCCTGAGCGA TCATGTGCAA GCCAAGGCAG GCAGCGCCAA CGCCCGGGGT
ACCGTGGCCG GGCTGCTCGC ACGCAAGCAA CTGACTGGCG CACAAGGCAA CGCTATCGGC
CTGTTCGTGT GGGGCTGGCC GCACGGCCCC GAGCAACAGG CCGAACGCCT CGCCCAGCTG
GCACGGCTGG GGTTTCCGGA CAGCCAGCTT TACAGCATCG CCATCGACAC GCTGGAGGAT
GCAGCACACT GGCGCGAGCA CTGGTATCGC TCTGCTCTGC CCTTCGCCAC CGACGGTGTA
ATCCTGCGCC AGAGCAGTCG GCCACCTGCC GAGCGCTGGC AGGCCAAGGC GCCCTACTGG
ATCGCGGCCT GGAAGTATCC CTATGCACAA GCCTTGGCCG AAGTACGCGA CGTGCGCTTT
CGGGTTGGCC GCACCGGCAG GGTCACGCCC GTGTTGCACT TGCTGCCGGT CACCCTGGAC
GACCGACGGA TTACCCAGGT AAGCCTGGGT TCGCTGGCGC GCTGGCACAC CCTCGACATC
CGCCCCGGCG ACCAGGTGGC CATCAGCCTG GCCGGGCTGA CCATTCCACG CCTGGAGCAA
GTGGTGCATC GCACGGTCGA ACGCCAGGCG GTCGCCGCGC CTGCGCCCGA CCGCTATCAT
GCCCACAGCT GCTGGCAAGC CAGCGAGGGC TGTGATGAGC AATTCATTGC CCGCCTCACC
TGGCTTGGCG GTAAACAGGG CCTGGCCTTG CCCCGCACCG GGCCCGGCAC ATGGCGTCGG
CTGGTCGAAG CGGGCTTGGT AACGTCCATG ACCGATTGGC TGCAGCTCGA TGCCGAGCGC
CTGCAGCAGG CCCCCGGCAT CAGCAGACTC ACCGCGGCAC ACCTGCTGGG CAGTTTCGAC
GAAGCCCGCT CACGCCCCTT CGATCAATGG CTGCGCGCCC TTGGCGTGCC CATTGGCAAG
CATTTGCCAC TAACTGGCGA CTGGCAGGCG CTGGCTTCAC GCAGCGCCGG GCATTGGCAA
ACTGTGCCCG GCATCGGCGC AAAACGCTCG CGCCAACTTG TGGAATTTTT CGCGGCCTCT
GAGGTGCAAG CCATCGCCGC ACAGTTGGCC GAAACCGGCA TAGAAGGTTT CCGGCCCCCA
CCCCAGCGCA TTGAGCAATG A
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| Protein sequence | MPYLLLFALL FALNAPLARA ASCPQWSPQQ AKAEVAQLRA TLARWDEHYH RQGIALVADE
LYDQSRERLN HLQQCFAVGT SPSPLASARG PVPHPVPHTG VDKLADRQAV ARWMAGKSGV
WVQPKVDGVA VSLTYQQGRL VQLTSRGDGV NGHDWSRHIP QLDAVTRQLP EALDLHLQGE
LYLRLSDHVQ AKAGSANARG TVAGLLARKQ LTGAQGNAIG LFVWGWPHGP EQQAERLAQL
ARLGFPDSQL YSIAIDTLED AAHWREHWYR SALPFATDGV ILRQSSRPPA ERWQAKAPYW
IAAWKYPYAQ ALAEVRDVRF RVGRTGRVTP VLHLLPVTLD DRRITQVSLG SLARWHTLDI
RPGDQVAISL AGLTIPRLEQ VVHRTVERQA VAAPAPDRYH AHSCWQASEG CDEQFIARLT
WLGGKQGLAL PRTGPGTWRR LVEAGLVTSM TDWLQLDAER LQQAPGISRL TAAHLLGSFD
EARSRPFDQW LRALGVPIGK HLPLTGDWQA LASRSAGHWQ TVPGIGAKRS RQLVEFFAAS
EVQAIAAQLA ETGIEGFRPP PQRIEQ
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