| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4827 |
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| Symbol | |
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| ID | 5192370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5414612 |
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| End bp | 5416795 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640589312 |
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| Product | YccS/YhfK family integral membrane protein |
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| Protein accession | YP_001270131 |
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| Protein GI | 148550029 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1289] Predicted membrane protein |
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| TIGRFAM ID | [TIGR01666] hypothetical membrane protein, TIGR01666
[TIGR01667] integral membrane protein, YccS/YhfK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.174 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATCGA GCTCGTTCCG TCAGTCACTG CGTCGCCTGT GGGGCCAAGA CAAGTTCAGC
TACAGCATCC GGGTCACCAT TGCCCTCACC GGCAGCCTGG CCCTGTGCTG GTACCAGAAC
GAGATGGCCC TGCTGATTCC GCTGTTCCTC GGCATCATCG CCAGCGCCCT GGCCGAAACC
GACGACAGCT GGCAGGGCCG CCTCAGCGCC CTGGCCGTTA CCCTGGTGTG CTTCGCTATC
GCTGCACTGG CAGTCGAGTT GCTGTTCCCC TACCCCTGGA TCTTCGTCAT TGCCCTGGCC
CTGGCGGCCT TTGGCCTGAC CATGCTCGGG GCGCTGGGCG AGCGCTACGG CGCCATCGCT
TCGGCCACCT TGATCACTTC GGTCTACACC ATGATCGGCG TGGACCAGCG CGGCGGTCAG
GTCACCGACT TCTGGCACGA ACCGCTGCTG CTGGTGGCAG GTGCGGCCTG GTACGGGCTG
TTGTCGGTGC TGTGGCAGGC GCTGTTTTCC AACCAGCCGG TACAACAGAG CCTGGCCAAA
CTGTTCTTCG AGCTGGGCAG CTACCTGAAG CTCAAGGCCA GCCTGTTTGA ACCGGTCCGC
ACGCTCGACG TCGAGGCACG GCGCCTGGAA CTGGCCCAGC AGAACGGCAA GGTGGTGGCC
GCGCTGAACG CAGCCAAGGA GATCATCCTG CACCGGGTGG GCAACAGCCA ACCCAACTCG
AAGGTAAGCC GCTACCTCAA GCTGTACTTC CTGGCCCAGG ACATCCACGA GCGTGTCAGT
GCCTCGCACT ACCCCTACAA CGCACTGACC GAGGCGTTTT TCCACAGCGA CGTCATGTTC
CGCTGCCAGC GCCTGTTGCG TAAGCAGGGT TCATCCTGCC AGGAACTGGC CCGCTCGATC
CGCCTGCGCC AACCATTCGT GCTGGCCAGC GGTTATCCAG AAGCCCTCGA AGACCTCAAC
GCCTCGCTGG AGCACCTGCG CATCCAGAGC AACCCGGCCT GGCGCGGCCT GTTGCGCTCA
CTGCGGGCAC TCGCCGCCAA CCTGGCAACA CTGGACCGCC TGCTCAGTGC CGCCAGCAAC
CCGGACAGCC TGGCCGACGC CAGCGACAGC AGCCTGCTCG ACCGCTCGCC GCGCTCGCTG
AAGGACGTGT GGACGCGCCT GCGCACCCAG CTCACACCGA CCTCGCTGTT GTTCCGCCAT
GCCTTGCGCC TGCCGCTGGC GCTGTCGATC GGCTATGGCA TGGTGCACCT GATTCACCCG
ACCCAGGGCT ACTGGATCAT CCTCACCACG CTGTTCGTGT GCCAGCCCAA CTACGGGGCC
ACGCGGCGCA AGCTGGTGCA GCGAATCTTC GGCACTGCCG TTGGCCTGAC AGTGGGTTGG
GCCTTGTTCG ACCTGTTCCC CAACCCGGTC ATCCAGTCGT TGTTCGCCGT GGTTGCCGGG
GTGGTGTTCT TCGTCAACCG CACCACCCGC TACACCCTGG CCACTGCCGC GATCACCCTG
ATGGTGCTGT TCTGCTTCAA CCAGATCGGC GATGGCTACG GCCTGTTCCT GCCACGCCTG
TTCGATACCC TGGTCGGCAG CCTGATTGCC ATTCTTGCAG TGTTCCTGTT CCTGCCTGAC
TGGCAGGGCC GACGGCTGAA CAAGGCGCTG GCCAATACCC TGGCCTGCGC CAGCGTTTAC
CTGCGCCAGA TCATGCAGCA GTACGCCCAC GGCAAGCGCG ACGACCTGGC CTACCGCCTG
GCCCGGCGCA ATGCCCACAA CGCTGACGCG GCGCTGTCCA CCACCTTGGC CAACATGCTG
ATGGAGCCGG GGCATTTCCG TAAGGAGGCC GACGTTGGCT TTCGCTTCCT GGTGCTGTCG
CACACGTTGC TCAGCTACCT CTCGGGGTTA GGCGCGCACC GCGACACGGC GTTGCCAGCA
GAGGTGCAGG AGCAGTTGAT CGAAGGCGCC GGGCAAAGCC TGGCCAGCAG CCTGGATGAG
ATTGCCAACG GCCTGGCCGC ACGGCTGCCG GTGGCGATTC ACAGTGATGC CGAAGAGGCG
CTGGCCAATG CCCTGGAGCA GATGCCGGAA GATCTGGATG AGCATCAGCG GCTGGTGCAG
ACGCAGCTGG CGTTGATATG CCGCCAGCTG GGGCCACTGC GGACCCTGGC GGCACACCTG
ATCAAGGAGA ATGCCCCGGC CTGA
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| Protein sequence | MSSSSFRQSL RRLWGQDKFS YSIRVTIALT GSLALCWYQN EMALLIPLFL GIIASALAET
DDSWQGRLSA LAVTLVCFAI AALAVELLFP YPWIFVIALA LAAFGLTMLG ALGERYGAIA
SATLITSVYT MIGVDQRGGQ VTDFWHEPLL LVAGAAWYGL LSVLWQALFS NQPVQQSLAK
LFFELGSYLK LKASLFEPVR TLDVEARRLE LAQQNGKVVA ALNAAKEIIL HRVGNSQPNS
KVSRYLKLYF LAQDIHERVS ASHYPYNALT EAFFHSDVMF RCQRLLRKQG SSCQELARSI
RLRQPFVLAS GYPEALEDLN ASLEHLRIQS NPAWRGLLRS LRALAANLAT LDRLLSAASN
PDSLADASDS SLLDRSPRSL KDVWTRLRTQ LTPTSLLFRH ALRLPLALSI GYGMVHLIHP
TQGYWIILTT LFVCQPNYGA TRRKLVQRIF GTAVGLTVGW ALFDLFPNPV IQSLFAVVAG
VVFFVNRTTR YTLATAAITL MVLFCFNQIG DGYGLFLPRL FDTLVGSLIA ILAVFLFLPD
WQGRRLNKAL ANTLACASVY LRQIMQQYAH GKRDDLAYRL ARRNAHNADA ALSTTLANML
MEPGHFRKEA DVGFRFLVLS HTLLSYLSGL GAHRDTALPA EVQEQLIEGA GQSLASSLDE
IANGLAARLP VAIHSDAEEA LANALEQMPE DLDEHQRLVQ TQLALICRQL GPLRTLAAHL
IKENAPA
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