| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4825 |
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| Symbol | |
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| ID | 5195379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5411612 |
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| End bp | 5413096 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640589310 |
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| Product | ATP-dependent RNA helicase DbpA |
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| Protein accession | YP_001270129 |
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| Protein GI | 148550027 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0463433 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCGTCG TCCGGAACAA CACATGGAGT CGTAGGGCGA ATGGCCACGA GGCTGGTAGA
CTATGCGGCA TTTTTCGCTT CGCACCGCAG GCCCGCCTCG TGACCACCGA ATCCACCGCC
TTTGCCACCT TGCCGCTGTC CACTGCCATG CTGGCCAACC TGGAAGCCCT CGGCTATGCC
TCGATGACGC CGATCCAGGC CCAGAGCCTG CCTGTCATCC TCAAAGGCCA GGACCTGATC
GCCCAGGCCA AGACCGGTAG CGGCAAGACT GCCGCCTTCG GCATCGGCCT GCTCAACCCG
ATCAACCCGC GCTATTTCGG CTGCCAGGCG TTGGTGCTCT GCCCTACCCG CGAACTCGCC
GACCAGGTGG CCAAGGAGCT GCGCCGCCTG GCCCGTGCCG AGGACAACAT CAAGATCCTG
ACCCTGTGCG GCGGCGTTTC GCTGGGCCCA CAGATCGCTT CGCTGGAGCA CGGTGCGCAC
ATCATCGTCG GCACCCCAGG GCGCATCCAG CAGCATCTGG ACAAAGGCAC CCTGGTCCTG
GACGGGTTGA ACACCCTGGT GCTGGACGAA GCCGACCGCA TGCTCGACAT GGGCTTCTTC
GACGCCATCG CCAGCATCAT CGGCAAGACC CCGTCGCGCC GCCAGACCCT GCTGTTCTCG
GCCACCTACC CGGCCGGCAT CAAGCAACTG GCCGCCGACT TCATGCGCAA CCCGCAGCAG
GTCAAGGTCG AAAGCCTGCA CACCGACAAC CAGATCGAGC AGCGTTTCAT CGAGATTGAC
CCGCAGCAAC GCCTGGAAGC CGTCACCCGC GTGCTCGGCC ACTACCGCCC GCAGTCGTGC
GTAGCGTTCT GCTTCACCAA GCAGCAATGC GAGGACGTGG TCGCCCACCT GACCGCCAAG
GGCATCGTCG CCCAGGCCCT GCACGGCGAC CTGGAGCAGC GCGACCGTGA CCAGGTGCTG
ACCATGTTCG CCAACCGCAG CAGCTCGGTG CTGGTGGCTA CCGACGTGGC CGCGCGCGGC
CTGGACATCG ATGGCCTGGA CATGGTCATC AACGTGGAGC TGGCGCGTGA TGCCGAAATC
CACGTGCATC GCGTGGGCCG TACCGGCCGC GCCGGCGAGA AAGGCGTTGC GGTCAGCCTG
GTGGCACCGG CCGAAGGCCA CCGCGCCCAG GCCATCGAAG CGCTGCAGAA GAGCCCGCTG
CGCTGGGACC AGTTGGACAG CCTGAAAAAC AAGGGCGGCG AGCCCCTGCT GCCGGTGATG
ACCACACTGT GCATTGCCGC TGGCCGCAAG GACAAGCTGC GCCCTGGCGA CATCCTGGGG
GCCTTGACCG GTGATGCCGG CATCCCGGGC AAGCAAGTGG GCAAGATCGC CATCTTCGAC
TTCCAGGCGT TTGTGGCCGT GGAGCGTGCG CTCGCCAAGC AGGCCATGCA GCGACTGAAC
AGCGGCAAGA TCAAGGGTCG CGCCCTGAAA GTCCGCATTC TCTAA
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| Protein sequence | MPVVRNNTWS RRANGHEAGR LCGIFRFAPQ ARLVTTESTA FATLPLSTAM LANLEALGYA
SMTPIQAQSL PVILKGQDLI AQAKTGSGKT AAFGIGLLNP INPRYFGCQA LVLCPTRELA
DQVAKELRRL ARAEDNIKIL TLCGGVSLGP QIASLEHGAH IIVGTPGRIQ QHLDKGTLVL
DGLNTLVLDE ADRMLDMGFF DAIASIIGKT PSRRQTLLFS ATYPAGIKQL AADFMRNPQQ
VKVESLHTDN QIEQRFIEID PQQRLEAVTR VLGHYRPQSC VAFCFTKQQC EDVVAHLTAK
GIVAQALHGD LEQRDRDQVL TMFANRSSSV LVATDVAARG LDIDGLDMVI NVELARDAEI
HVHRVGRTGR AGEKGVAVSL VAPAEGHRAQ AIEALQKSPL RWDQLDSLKN KGGEPLLPVM
TTLCIAAGRK DKLRPGDILG ALTGDAGIPG KQVGKIAIFD FQAFVAVERA LAKQAMQRLN
SGKIKGRALK VRIL
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