Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4824 |
Symbol | |
ID | 5195378 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5410219 |
End bp | 5411646 |
Gene Length | 1428 bp |
Protein Length | 475 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640589309 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_001270128 |
Protein GI | 148550026 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0486949 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGAAC GCACCCCGCT GGACCCCGTC ACCGCCCGCT GGATCCCTTG GGTGGTGGCC ATCGCCTTCT TCATGCAGTC CCTGGACGGC ACCATCCTCA ACACGGCGCT GCCGGCCATG GCCCGCTCGT TGGCCGAAGA CCCCTTGCGC ATGCAAGGTG TGATCATTGC CTACATGCTC ACCGTGGCCC TGCTGATCCC TGCCTCAGGC TGGATCGCCG ACCGTTTCGG CACCAAGCGC ATCTTCTTCA GCGCCATCTT GCTGTTCAGC TTTGGCTCGC TGCTGTGCGC CGCAGCCAAC AGCCTTGGCT TCCTGATCTT CGCCCGCGTA GTGCAGGGCC TGGGCGGTGC GCTGATGCTG CCAGTCGGGC GGCTTGTGGT GCTGCGCGCC TACCCACGCA GCGAGCTGGT GCGGATCATG AGTTTCATCA CCATCCCCGG CCTGCTCGGG CCATTGCTGG GGCCAACGGT TGGTGGCTGG CTGGTGGAAA TCCTCAGCTG GCACTGGATC TTCCTGCTCA ACCTGCCTGT CGGCCTGCTT GGCTGCATTG CCGTGTGGAA GTTCATCCCG GACTTGCGCG GCGCCGAGCG CACCACCTTC GACGGCCCTG GTTTCCTGCT GTTCGGCGCA GCGATGGTAC TGATCACCAT TGCCATGGAA GGCCTGGGCG AGCTGCACCT GCCGCACTTG CGGGTAATGT TGCTGCTGTT CGCCGGCATG GCCTGCCTGG CCGCGTACTG GCTGCGCGCC GGGCGCGACC CGGAGCCGCT GTTCTCGCCA AGCCTGTTCC GCGTGCGCAC CTTCGCCATC GGCATCCTCG GCAACCTGTT CGCCCGCCTG GGCAGCGGCG CGCTGCCGTT CCTGGTGCCG TTGCTGCTGC AGGTTGCGCT GGGCTACTCA CCCGCCCAGG CAGGCATGAG CATGATCCCG CTGGCGGCGG CGGCCATGCT GGCCAAATCC ATTGCCCGAC CGCTGATCGA ACGGTTCGGC TATCGCATCA TCCTCACCGG CAATACCTTG CTGCTGGGCA TCCTGCTGGC AAGCCTGGGC CTGGTGGACG AGCAGACCCC CTATTGGCTG CTGTTGGTGC AACTTGGCCT TCTGGGCGCA GTGAACTCCA TGCAGTTCAC TGCGATGAAC ACAGTGACGC TCATCGATCT CGACGACGCC AGCGCCAGCA GCGGTAACAG CCTGCTGTCG GTGGTCGCGC AACTGTCGCT GAGCCTGGGT GTGGCCTGCG CCGGCGCACT GTTGGGCGGC TTTACTGCGG CAGGCAGCGC CGAGGGCGTG GAAACCACCC TGGGCGCGTT CCAGCTGACC TTCGTCACCA TCGGCGTAAT GGCCATGCTG GCAGCGGCGA TCTTCCTGCA GCTGGCGCCG ACGGACGGAA GGCGTGCCCG TCGTCCGGAA CAACACATGG AGTCGTAG
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Protein sequence | MPERTPLDPV TARWIPWVVA IAFFMQSLDG TILNTALPAM ARSLAEDPLR MQGVIIAYML TVALLIPASG WIADRFGTKR IFFSAILLFS FGSLLCAAAN SLGFLIFARV VQGLGGALML PVGRLVVLRA YPRSELVRIM SFITIPGLLG PLLGPTVGGW LVEILSWHWI FLLNLPVGLL GCIAVWKFIP DLRGAERTTF DGPGFLLFGA AMVLITIAME GLGELHLPHL RVMLLLFAGM ACLAAYWLRA GRDPEPLFSP SLFRVRTFAI GILGNLFARL GSGALPFLVP LLLQVALGYS PAQAGMSMIP LAAAAMLAKS IARPLIERFG YRIILTGNTL LLGILLASLG LVDEQTPYWL LLVQLGLLGA VNSMQFTAMN TVTLIDLDDA SASSGNSLLS VVAQLSLSLG VACAGALLGG FTAAGSAEGV ETTLGAFQLT FVTIGVMAML AAAIFLQLAP TDGRRARRPE QHMES
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