Gene Pput_4819 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4819 
SymbolputA 
ID5191830 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5400200 
End bp5404153 
Gene Length3954 bp 
Protein Length1317 aa 
Translation table11 
GC content66% 
IMG OID640589304 
Producttrifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001270123 
Protein GI148550021 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.952449 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGACTA CCACCCTTGG GGTCAAACTC GACGACCCGA CCCGTGAGCG ACTCAAAGCA 
GCTGCGCAGT CCATTGACCG CACGCCGCAC TGGTTGATCA AGCAAGCGAT CTTCAACTAT
CTGGAGAAGC TCGAGGGTGG CGCCACCCTG ACCGAACTCA ACGGTCATGT CAGCAACCTG
GCCGACGATG CCGGTGAAGT CCAGGCCGAC CACAGCCACC AGTGCTTCCT CGAATTTGCC
GAAAGCATCT TGCCGCAGTC GGTACTGCGC TCGGCGATCA CCGCTGCCTA CCGCCGACCG
GAGCAGGAAG TGGTGCCGAT GCTGCTGGAG CAGGCGCGCC TGAGCGCGCC ACTGGCCGAA
GCCACCAACA AGCTGGCCGC GGGCATTGCC GAAAAGCTGC GCAATCAGAA AAGCGCCGGC
GGCCGTGCCG GTATCGTCCA GGGCCTGCTG CAAGAATTCT CGCTGTCGTC TCAGGAAGGC
GTGGCGCTGA TGTGCCTGGC CGAAGCCCTG CTGCGTATCC CCGACAAAGG TACCCGTGAT
GCGCTGATCC GCGACAAGAT CAGTACCGGC AACTGGCAGC CGCACCTGGG CAACAGCCCG
TCACTGTTCG TCAACGCCGC CACCTGGGGG CTGCTGCTGA CCGGCAAGCT GGTCAGCACC
CATAACGAAA CCGGCCTCAC CTCCTCGCTC ACCCGCATCA TCGGCAAGAG CGGCGAACCG
ATGATCCGCA AGGGCGTCGA CATGGCCATG CGCCTGATGG GTGAGCAGTT CGTCACCGGC
GAGACCATTG CCGAAGCCCT GGCCAACGCC AGCCGTTTCG AGGCCAAAGG CTTCCGTTAC
TCCTACGACA TGCTCGGCGA AGCCGCACTG ACCGAGCACG ACGCGCAGAA GTACCTGGCG
TCCTACGAGC AAGCCATCCA CTCGATCGGC AAGGCCTCGC ATGGCCGTGG CATCTATGAA
GGCCCAGGTA TCTCGATCAA GCTGTCGGCA CTGCACCCGC GCTACAGCCG CGCCCAGTAC
GAGCGCGTGA TGGAGGAGCT GTACCCGCGC CTGCTGTCGC TGACCCTGCT GGCCAAGCAG
TACGACATCG GCCTTAACAT CGACGCCGAA GAAGCCGACC GCCTGGAGCT TTCGCTGGAC
CTGCTCGAAC GCCTGTGCTT CGAGCCATCC CTGGCTGGCT GGAACGGCAT CGGCTTCGTT
ATCCAGGCCT ACCAGAAGCG CTGCCCGTAC GTGATCGACT ACGTCATCGA TCTGGCCAAG
CGCAGCCGCC ACCGCCTGAT GATCCGCCTG GTAAAAGGCG CCTACTGGGA CAGCGAGATC
AAGCGTGCCC AGGTCGAAGG CCTGGAAGGC TACCCGGTCT ATACCCGCAA GGTGTACACC
GACGTGTCCT ACGTCGCCTG CGCCCGCAAG CTGCTGGCCG TGCCAGAAGC CATCTACCCG
CAGTTCGCCA CCCACAACGC CCACACCCTG TCGGCCATCT ACCACATTGC CGGGCAGAAC
TATTACCCGG GCCAGTACGA GTTCCAGTGC CTGCACGGCA TGGGCGAGCC GCTGTACGAG
CAAGTGGTCG GCAAGATTGC CGATGGCAAG CTGAACCGCC CGTGCCGCGT GTATGCACCG
GTCGGCACCC ATGAAACGCT GCTGGCCTAC CTGGTGCGCC GCCTGCTGGA AAACGGCGCG
AACACCTCGT TCGTCAACCG CATTGCCGAC CACTCGATTT CCATCCAGGA ACTGGTCGCC
GACCCGGTGG CCAGCATCGA GCGCATGGGT ACCCAGGAAG GCAGTATCGG CCTGCCGCAC
CCACGCATTC CCCTGCCGCG CGACCTGTAT GGCACCGAAC GGGCCAACTC GGCCGGTATC
GACATGGCCA ACGAACACCG CCTGGCATCG CTGTCCTGCG CCATGCTGGC CACCGCTCAC
AATGACTGGA AGGCTGCCCC GCTACTGGCC TGCGCCGCCA GCGAGAGCGC AGCCGCACCG
GTGCTGAACC CGGCTGACCA CCGCGACGTC GTCGGCCATG TGCAGGAGGC CACCGTTGCC
GACGTGGACA ACGCCATCCA GTGCGCACTG AACGCCGCAC CGATCTGGCA GGCCACCCCG
CCAGCCGAGC GTGCTGCCAT TCTGGAGCGC ACCGCCGACC TGATGGAGGC CGAGATCCAG
CCGCTGATGG GCCTGCTCAT CCGCGAGGCC GGCAAGACCT TCGCCAACGC CATTGCCGAA
GTGCGTGAAG CCGTGGACTT CCTGCGCTAC TACGCGGTGC AAGCACGTAA CGACTTCAGC
AACGACGCCC ACCGCCCACT GGGCCCTGTG GTGTGCATCA GCCCATGGAA CTTCCCGCTG
GCGATCTTCA CCGGCCAGGT GGCCGCAGCC CTGGCTGCCG GCAACCCGGT ACTGGCCAAG
CCTGCCGAGC AAACCCCACT GATCGCCGCC CAGGCCGTGC GCCTGCTGCT GGAAGCTGGC
ATCCCAGAAG GCGTGCTGCA GCTGCTGCCT GGCCGCGGTG AAACCGTCGG AGCCGGCCTG
GTCGGGGACG AACGCGTCAA AGGTGTGATG TTCACCGGCT CCACTGAAGT GGCCCGCCTG
CTGCAGCGCA ACGTCGCTGG CCGTCTGGAC AACCAGGGCC GCCCGATCCC GCTGATCGCC
GAAACCGGCG GCCAGAACGC GATGATCGTC GACTCCTCGG CACTGACCGA ACAGGTCGTG
ATCGACGTGG TGTCCTCGGC CTTCGACAGT GCCGGCCAGC GTTGCTCGGC CCTGCGCGTA
CTGTGCCTGC AGGAAGACTC CGCCGACCGC GTAATCGAGA TGCTCAAGGG CGCCATGGCT
GAAAGCCGCC TGGGCTGCCC GGACCGCCTG GCCGTGGACA TCGGCCCGGT GATCGATGCC
GAAGCCAAGG CTGGCATCGA GAAGCACATC CAGGGCATGC GCGAGAAAGG CCGCCCGGTC
TACCAAGTCG CTATTGCCGA TGCTGCCGAG ATCAAGCGTG GCACTTTCGT CATGCCAACC
CTGATCGAGC TGGACAGCTT CGACGAGCTG AAGCGCGAAA TCTTCGGCCC CGTGCTGCAC
GTGGTGCGCT ACAACCGCCG CAATCTGGAC CAGCTGATCG AGCAGATCAA CAACTCCGGC
TACGGCCTGA CCCTCGGCGT GCACACCCGT ATCGACGAGA CCATCGCCAA GGTGGTGGAA
ACCGCCAACG CCGGCAACAT GTACGTCAAC CGCAACATTG TGGGTGCAGT GGTGGGCGTG
CAGCCGTTCG GTGGTGAAGG CCTGTCGGGC ACCGGCCCGA AAGCCGGCGG CCCGCTGTAC
CTCTACCGCC TGCTGTCGAC CCGCCCGGCC GACGCCATCG GCCGCCACTT CCAGCAGCAG
GACGGCGAAG GCAAGCCGGA CCGCACCCTG CACGAACAGC TGGTCAAGCC GCTGCACGGC
CTGAAGGCCT GGGCCGAGAG CAACCAGCTG GCCGACCTGG CCGCGCTGTG CAGCCAGTTC
GCCAGCCAGT CGCAGAGCGG CATCGCCCGC CTGCTGCCTG GCCCGACCGG CGAGCGCAAC
AGCTACACCA TTCTGCCGCG TGAGCACGTG CTGTGCCTGG CCGACAACGA AACCGACCTG
CTGGCGCAGT TCGCCGCAGT ACTGGCCGTT GGCAGCTCGG CGGTGTGGGT TGACGGTGAA
CCGGGCAAGG CCCTGCGCGC CCGCCTGCCG CGTGAGCTGC AGGCCAAGGT GAAGCTGGTC
GCGGACTGGA ACAAGGATGA AGTAGCGTTC GACGCCGTGA TCCACCATGG CGACTCGGAC
CAGCTGCGCG GCGTATGCCA GCAGGTGGCC AAGCGAGCCG GGGCGATCGT TGGGGTGCAC
GGGCTGTCCA GCGGTGATCA CCAGATTGCG CTGGAGCGCC TGGTCATCGA GCGCGCGGTG
AGCGTGAACA CTGCGGCGGC GGGTGGTAAC GCCAGCCTGA TGACCATTGG CTAA
 
Protein sequence
MATTTLGVKL DDPTRERLKA AAQSIDRTPH WLIKQAIFNY LEKLEGGATL TELNGHVSNL 
ADDAGEVQAD HSHQCFLEFA ESILPQSVLR SAITAAYRRP EQEVVPMLLE QARLSAPLAE
ATNKLAAGIA EKLRNQKSAG GRAGIVQGLL QEFSLSSQEG VALMCLAEAL LRIPDKGTRD
ALIRDKISTG NWQPHLGNSP SLFVNAATWG LLLTGKLVST HNETGLTSSL TRIIGKSGEP
MIRKGVDMAM RLMGEQFVTG ETIAEALANA SRFEAKGFRY SYDMLGEAAL TEHDAQKYLA
SYEQAIHSIG KASHGRGIYE GPGISIKLSA LHPRYSRAQY ERVMEELYPR LLSLTLLAKQ
YDIGLNIDAE EADRLELSLD LLERLCFEPS LAGWNGIGFV IQAYQKRCPY VIDYVIDLAK
RSRHRLMIRL VKGAYWDSEI KRAQVEGLEG YPVYTRKVYT DVSYVACARK LLAVPEAIYP
QFATHNAHTL SAIYHIAGQN YYPGQYEFQC LHGMGEPLYE QVVGKIADGK LNRPCRVYAP
VGTHETLLAY LVRRLLENGA NTSFVNRIAD HSISIQELVA DPVASIERMG TQEGSIGLPH
PRIPLPRDLY GTERANSAGI DMANEHRLAS LSCAMLATAH NDWKAAPLLA CAASESAAAP
VLNPADHRDV VGHVQEATVA DVDNAIQCAL NAAPIWQATP PAERAAILER TADLMEAEIQ
PLMGLLIREA GKTFANAIAE VREAVDFLRY YAVQARNDFS NDAHRPLGPV VCISPWNFPL
AIFTGQVAAA LAAGNPVLAK PAEQTPLIAA QAVRLLLEAG IPEGVLQLLP GRGETVGAGL
VGDERVKGVM FTGSTEVARL LQRNVAGRLD NQGRPIPLIA ETGGQNAMIV DSSALTEQVV
IDVVSSAFDS AGQRCSALRV LCLQEDSADR VIEMLKGAMA ESRLGCPDRL AVDIGPVIDA
EAKAGIEKHI QGMREKGRPV YQVAIADAAE IKRGTFVMPT LIELDSFDEL KREIFGPVLH
VVRYNRRNLD QLIEQINNSG YGLTLGVHTR IDETIAKVVE TANAGNMYVN RNIVGAVVGV
QPFGGEGLSG TGPKAGGPLY LYRLLSTRPA DAIGRHFQQQ DGEGKPDRTL HEQLVKPLHG
LKAWAESNQL ADLAALCSQF ASQSQSGIAR LLPGPTGERN SYTILPREHV LCLADNETDL
LAQFAAVLAV GSSAVWVDGE PGKALRARLP RELQAKVKLV ADWNKDEVAF DAVIHHGDSD
QLRGVCQQVA KRAGAIVGVH GLSSGDHQIA LERLVIERAV SVNTAAAGGN ASLMTIG