| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4807 |
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| Symbol | |
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| ID | 5193847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5385381 |
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| End bp | 5387189 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640589292 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001270111 |
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| Protein GI | 148550009 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGAAA CACCGCGACC AGCGGAGCAC ACCTCCAGCC TGAAGATCTA CTTCCGGCTG
TTGAGCTATG TGAAACCCTA TGTCGGCATT TTCCTGCTGA GCATTGTCGG TTTCGTGATC
TTTGCCTCGA CCCAGCCAAT GCTGGCCGGC ATTCTCAAGT ACTTCGTCGA TGGGCTGAGC
AACCCCGAAG CGGTATTGTT CCCCAACGTC CCCTACCTGC GTGACCTGCA ATTGCTGCAG
GCGGTGCCGC TGCTGATCAT CCTGATCGCT GCGTGGCAGG GCCTGGGCTC GTTCCTCGGC
AACTACTTCC TGGCCAAGGT CTCTCTGAGC CTGGTGCATG ACCTGCGGGT GGCGTTGTTC
AACAAGCTGT TGGTGTTGCC CAACCGCTAC TTCGACAACC ACAACTCCGG GCACCTGATT
TCGCGCATTA CCTTCAATGT GACCATGGTC ACCGGCGCCG CTACCGACGC CATCAAGGTG
GTAATCCGCG AAGGCCTGAC CGTGGTGTTC CTGTTTGCCT ACCTGCTTTG GATGAACTGG
CACCTGACCC TGGTGATGGT TGCCATCTTG CCGGTGATCG CGGTTATGGT CAGCATCGCC
AGCAAGAAAT TCCGCAAGCA GAGCAAGAAG ATCCAGGTAG CCATGGGCGA CGTCACCCAC
GTTGCCTCGG AAACCATCCA GGGTTACCGC GTGGTCCGTA GCTTCGGTGG CGAGGCCTAC
GAACAGCAGC GATTCGGCCA GGCCAGCCAG AGCAACACCG ACAAGCAACT GCGCATGACC
AAGACCGGGT CGCTGTACAC GCCGATGCTT CAGCTGGTGA TCTACAGCGC CATGGCTGCG
CTGATGTTCC TGGTACTGTT CCTGCGCGGT GAGTCCACTG CCGGTGACCT GGTGGCTTAT
ATCACCGCTG CCGGCCTGCT GCCCAAGCCG ATTCGCCAGT TGTCGGAAGT CAGCTCGACC
ATCCAGAAGG GCCTGGCAGG TGCCGAGAGC ATCTTCGAAC AGCTGGACGA AGCGCCTGAA
GTGGACACTG GTACGGTCGA GAAGGCGCGC GTGGAAGGGC GCCTGGAAGT GCGCAACCTG
AGCTTCACTT ACCCGGGTAC CGAGCGTGAA GTGTTGAGCG ACATCAGTTT TGTCGCCGAG
CCCGGGCAGA TGATCGCCCT GGTCGGCCGC TCCGGCAGTG GCAAGTCGAC CCTGGCGGCC
CTTATTCCAC GCTTCTATCA CCACGACAAG GGGCAGATCC TGCTCGATGG CGTGGAGATC
GAGCACTATC GCCTGCGCAA CCTGCGTCGC CATGTTTCGC AAGTCACCCA GCATGTCACC
TTGTTCAACG ACACCGTGGC CAACAACATC GCGTATGGCG ATCTGGCCGG CGCGCCGCGC
GCAGACATCG AAGCCGCCGC GGCCGATGCC TATGCCAAGG AGTTCGTCGA CCGGCTGCCA
AAGGGCTTCG ATACCGAAGT GGGTGAGAAC GGTGTACTGC TTTCCGGGGG CCAGCGCCAG
CGCCTGGCAA TTGCCCGTGC GCTGCTTAAA AACGCGCCGT TGCTGATCCT CGACGAAGCG
ACGTCGGCGT TGGATACAGA GTCCGAGCGG CATATCCAGG CCGCCCTGGA CCACGTGATG
CAAGGTCGTA CCACGCTGGT GATTGCCCAT CGCCTGTCGA CCATCGAGAA GGCCGACCAG
ATCCTGGTCA TGGACCAGGG CCGCCTGGTC GAGCGCGGTA CTCACACCGA GCTACTTGCG
GCTAATGGCC ATTATGCCCG TCTGCATGCC ATGGGGCTGG ATGAGCCGGC CAAGGCCGAT
ATCACCTGA
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| Protein sequence | MAETPRPAEH TSSLKIYFRL LSYVKPYVGI FLLSIVGFVI FASTQPMLAG ILKYFVDGLS
NPEAVLFPNV PYLRDLQLLQ AVPLLIILIA AWQGLGSFLG NYFLAKVSLS LVHDLRVALF
NKLLVLPNRY FDNHNSGHLI SRITFNVTMV TGAATDAIKV VIREGLTVVF LFAYLLWMNW
HLTLVMVAIL PVIAVMVSIA SKKFRKQSKK IQVAMGDVTH VASETIQGYR VVRSFGGEAY
EQQRFGQASQ SNTDKQLRMT KTGSLYTPML QLVIYSAMAA LMFLVLFLRG ESTAGDLVAY
ITAAGLLPKP IRQLSEVSST IQKGLAGAES IFEQLDEAPE VDTGTVEKAR VEGRLEVRNL
SFTYPGTERE VLSDISFVAE PGQMIALVGR SGSGKSTLAA LIPRFYHHDK GQILLDGVEI
EHYRLRNLRR HVSQVTQHVT LFNDTVANNI AYGDLAGAPR ADIEAAAADA YAKEFVDRLP
KGFDTEVGEN GVLLSGGQRQ RLAIARALLK NAPLLILDEA TSALDTESER HIQAALDHVM
QGRTTLVIAH RLSTIEKADQ ILVMDQGRLV ERGTHTELLA ANGHYARLHA MGLDEPAKAD
IT
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