| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4799 |
|---|
| Symbol | |
|---|
| ID | 5193664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5376507 |
|---|
| End bp | 5377940 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640589284 |
|---|
| Product | TolC family type I secretion outer membrane protein |
|---|
| Protein accession | YP_001270103 |
|---|
| Protein GI | 148550001 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.125067 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGCA AACTCTCACT GGCGATAGCC GTGTCTTGTG CGTCCAACGG AGTGGTCTGG
GCAGCGGACG TGCCTTCGAC AGTCAAAACC GATCTGGTCA GCGTCTACCA GGAAGCAGTG
GACAACAACG CCGACCTGGC TGCAGCCCGC GCCGATTACG GGGCGCGCCG CGAAGTGGTG
CCGCAGGCCC GCGCCGGGTT GCTGCCAAAC CTGTCGGCCG GTGCCGAGAT GATGAACACC
CGCACCAAGC TGGACGAGCC GTCCATGACG TCCAATCGCA GCGGCAACGC CTGGAGCGCG
ACCCTGGCTC AGCCCATCTT CCGCGCTGAT CGCTGGTTCC AGTTGCAAGC CGCCGAAGCA
GTCAACGAAC AGGCAGCACT GGAGCTGTCG GCGACCGAGC AAAACCTGAT CCTGCAAACC
GCGCAAAACT ACTTCGCCGT CCTCCGCGCC CAGGACAATC TGGCCGCCAC CAAGGCAGAA
GAAGCCGCCT TCAAGCGCCA GCTGGATCAG TCCAACGAGC GTTTCGACGT GGGCCTTTCG
GACAAGACCG ACGTGCTGCA ATCCCAAGCC AGTTATGACA CTGCACGGGC CAACCGGATC
ATCGCCGAAC GCCAGGTGCA GGACGCCTTC GAGGCCCTGG TAACCCTGAC CAACCGTGAG
TACACCGCTA TCCAGGGCGT GGTGCATAGC CTGCCGGTAC AAGTGCCAAC GCCCAACGAT
GCCAAAGCCT GGGTCGAAAC CGCCGGGCGC CAGAACCTCA ACCTGCTGGC CACCAACTAC
GCGGTTTCTG CCGCAGAAGA GACCCTGCGT CAGCGCAAGG CCGGGCATGC ACCGACCCTG
GACGCCGTGG CCAAGTACCA GAAGGGTGAC AACGACAGCC TTGGCTTCAC CAACCCATCG
CAACTGGGGG TGCGCTACAG CGGCGACGTC GAGCAGACCA GCGTTGGCCT GCAACTGAAC
ATACCGATCT ACAGCGGCGG CCTGACCAGC TCGCAGGTAC GCGAGGCTTA CCAGCGCCTG
AGCCAGAGCG AGCAACAGCG TGAAAGCCTG CGCCGCCAGG TCGTGGAGAA CACCCGCAAC
CTGCACCGCG CAGTGAACAC CGATGTGGAA CAGGTACAGG CGCGCAAGCA GTCGATCATT
TCCAACCAGA GCGCGCTGGA AGCCACCGAA ATCGGCTACC AGGTCGGTAC CCGCAACATC
GTCGACGTGC TTGATGCCCA GCGCCAGCTG TACACCTCGG TGCGCGACTA CAACAATAGC
CGTTACGACT ACATCCTCGA CAACCTGAGC CTGAAGCAGG CAGCCGGCAC CCTGAGCCCG
CAAGACCTGC AGGACCTGAA GCGCTACCTG AAACCTGACT ACAACCCGGA CAAGGACTTC
CTGCCGCCGG ACCTGGCGGC AGCAGCGGCC AAGAACTTCG AGCGCAGGCC TTGA
|
|---|
| Protein sequence | MLRKLSLAIA VSCASNGVVW AADVPSTVKT DLVSVYQEAV DNNADLAAAR ADYGARREVV
PQARAGLLPN LSAGAEMMNT RTKLDEPSMT SNRSGNAWSA TLAQPIFRAD RWFQLQAAEA
VNEQAALELS ATEQNLILQT AQNYFAVLRA QDNLAATKAE EAAFKRQLDQ SNERFDVGLS
DKTDVLQSQA SYDTARANRI IAERQVQDAF EALVTLTNRE YTAIQGVVHS LPVQVPTPND
AKAWVETAGR QNLNLLATNY AVSAAEETLR QRKAGHAPTL DAVAKYQKGD NDSLGFTNPS
QLGVRYSGDV EQTSVGLQLN IPIYSGGLTS SQVREAYQRL SQSEQQRESL RRQVVENTRN
LHRAVNTDVE QVQARKQSII SNQSALEATE IGYQVGTRNI VDVLDAQRQL YTSVRDYNNS
RYDYILDNLS LKQAAGTLSP QDLQDLKRYL KPDYNPDKDF LPPDLAAAAA KNFERRP
|
|---|
| |