Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4798 |
Symbol | |
ID | 5193663 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5374205 |
End bp | 5376085 |
Gene Length | 1881 bp |
Protein Length | 626 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640589283 |
Product | thiamine biosynthesis protein ThiC |
Protein accession | YP_001270102 |
Protein GI | 148550000 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAAC AAGAAAAAGC GATCAACCTC AGCGAATCGG CACAAGTCGA TCAGCAGTCC GTGCAACCGT TCCCGCGTTC GCGCAAGGTG TATGTCGAAG GCTCGCGCCC GGACATCCGT GTCCCCATGC GTGAAATCAG CCTGGATGAC ACCCCGACCG ATTTCGGCGG CGAGTCCAAC GCCCCGGTGC TGGTGTATGA CACGTCTGGC CCGTACACCG ACCCCGACGT GATCATCGAC GTGCGCAAAG GCCTGGCCGA TGTGCGTTCG GCGTGGATCG AAGCCCGCGG TGACACCGAG CGCCTGGAAG GCCTGAGCTC CGACTTCGGT CAGCAGCGCC TGAACGATGC GGAGCTGGCC AAGCTGCGTT TCGCCCATGT GCGCAACCCG CGCCGGGCCA AGGCCGGCGC CAACGTCTCG CAGATGCACT ATGCCCGTCA GGGCATCATC ACCGCCGAAA TGGAATACGT GGCCATCCGC GAGAACATGA AGCTACAGGA GGCCCGCGCC GCCGGCCTGC TGAATGAGCA ACATGCCGGC CACAGCTTCG GTGCCAACAT CCCGAAAGAA ATTACCCCTG AATTCGTCCG CCAGGAAATC GCCCGTGGCC GCGCGATCAT TCCGGCCAAC ATCAACCACC CGGAAGTAGA GCCGATGATC ATCGGCCGCA ATTTCCTGGT GAAGATCAAC GGCAACATCG GCAACAGCGC CCTGGGTTCC TCGATCGAGG AAGAGGTGGC CAAGCTGACC TGGGGCATCC GCTGGGGCTC GGACACGGTC ATGGACTTGT CCACCGGCAA GCACATCCAC GAAACCCGCG AGTGGATCAT TCGCAACTCG CCGGTGCCGA TCGGTACCGT GCCGATCTAC CAGGCCCTGG AAAAGGTCAA CGGCGTGGCA GAGGACCTGA CCTGGGAACT GTTCCGCGAC ACCCTGATCG AGCAGGCCGA ACAGGGTGTG GACTACTTCA CCATTCACGC CGGTGTGCTG CTGCGCTATG TGCCCCTGAC CGCCAAGCGG GTCACCGGCA TCGTCAGCCG CGGTGGCTCG ATCATGGCCA AGTGGTGCCT GGCGCACCAC AAGGAAAACT TCCTGTACAC CCACTTCGAC GAAATCTGCG AAATCATGAA GGCCTACGAC GTCAGCTTCT CGCTGGGCGA CGGCCTGCGC CCTGGCTCGA TTGCCGACGC CAACGACGCC GCGCAATTCG GTGAGCTGGA AACCCTCGGC GAGCTGACCA AGATTGCCTG GAAGCACGAC GTGCAATGCA TGATCGAAGG CCCCGGCCAC GTGCCGATGC AGTTGATCAA AGAGAACATG GACAAGCAGC TGGAGTGCTG CGACGAGGCG CCGTTCTACA CCCTCGGCCC ACTGACCACC GACATCGCGC CGGGTTACGA CCACATCACC TCGGGCATTG GTGCGGCGAT GATCGGCTGG TTCGGTTGCG CCATGCTCTG CTACGTCACG CCGAAGGAGC ACTTGGGCCT GCCGAACAAG GACGACGTCA AGACCGGCAT CATCACCTAC AAGATCGCCG CGCATGCCGC CGACCTTGCC AAGGGCCACC CGGGTGCACA GATTCGCGAC AACGCCTTGT CCAAGGCGCG TTTCGAGTTC CGTTGGGAAG ACCAGTTCAA CCTGGGCCTC GACCCGGACA CTGCCCGCGC TTTCCACGAC GAGACCCTGC CGAAGGAATC GGCCAAGGTC GCGCACTTCT GCTCGATGTG CGGGCCGAAG TTCTGCTCGA TGAAGATCAC CCAGGAAGTG CGTGAGTACG CAGCCAAGAT CGAGGCCGTG GATGTGACGG TCGAGCAAGG CATGCGTGAG CAGGCCGAGC GGTTCCGCCA GGAAGGCAGC CAGCTGTACC ACAAAGTCTA A
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Protein sequence | MTKQEKAINL SESAQVDQQS VQPFPRSRKV YVEGSRPDIR VPMREISLDD TPTDFGGESN APVLVYDTSG PYTDPDVIID VRKGLADVRS AWIEARGDTE RLEGLSSDFG QQRLNDAELA KLRFAHVRNP RRAKAGANVS QMHYARQGII TAEMEYVAIR ENMKLQEARA AGLLNEQHAG HSFGANIPKE ITPEFVRQEI ARGRAIIPAN INHPEVEPMI IGRNFLVKIN GNIGNSALGS SIEEEVAKLT WGIRWGSDTV MDLSTGKHIH ETREWIIRNS PVPIGTVPIY QALEKVNGVA EDLTWELFRD TLIEQAEQGV DYFTIHAGVL LRYVPLTAKR VTGIVSRGGS IMAKWCLAHH KENFLYTHFD EICEIMKAYD VSFSLGDGLR PGSIADANDA AQFGELETLG ELTKIAWKHD VQCMIEGPGH VPMQLIKENM DKQLECCDEA PFYTLGPLTT DIAPGYDHIT SGIGAAMIGW FGCAMLCYVT PKEHLGLPNK DDVKTGIITY KIAAHAADLA KGHPGAQIRD NALSKARFEF RWEDQFNLGL DPDTARAFHD ETLPKESAKV AHFCSMCGPK FCSMKITQEV REYAAKIEAV DVTVEQGMRE QAERFRQEGS QLYHKV
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