| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4788 |
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| Symbol | |
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| ID | 5194901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5363352 |
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| End bp | 5365610 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640589273 |
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| Product | DNA topoisomerase IV subunit A |
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| Protein accession | YP_001270092 |
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| Protein GI | 148549990 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
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| TIGRFAM ID | [TIGR01062] DNA topoisomerase IV, A subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.172576 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGACT CACTGGAACT CAGCCTGGAC GGCGTAGAAC GCCGCTCGCT GGCTGAATTC
ACCGAACAGG CCTACCTCAA CTACTCCATG TACGTGATCA TGGACCGTGC CCTGCCGCAC
ATCGGCGACG GCCTGAAGCC GGTGCAGCGC CGCATCGTCT ACGCCATGAG CGAGTTGGGG
CTCGATGCCG ATGCCAAGCA CAAGAAGTCG GCACGTACCG TCGGTGACGT GCTTGGCAAG
TTCCATCCCC ATGGCGATTC GGCCTGCTAC GAGGCCATGG TGCTGATGGC GCAGCCGTTC
AGCTACCGCT ACACCTTGGT CGATGGCCAG GGCAACTGGG GTGCGCCGGA TGATCCGAAG
TCGTTCGCCG CCATGCGCTA CACCGAGGCG CGGCTGTCAC GCTACGCTGA AGTGCTGCTC
AGCGAAGTCG GCCAGGGCAC CGTGGACTGG GTGCCGAACT TCGACGGCAC GTTGCAGGAG
CCGGCCGTGC TGCCTGCGCG CCTGCCCAAC ATCCTGCTCA ACGGTACCAC CGGTATCGCC
GTGGGCATGG CCACCGACGT ACCGCCGCAC AACCTGCGAG AGGTGGCCAG TGCCTGTGTG
CGACTGCTCG ATGAGCCCAA GGCAACCATT GAGCAGTTGT GCGAGCACAT CCAGGGGCCG
GATTACCCGA CCGAGGCCGA GATCGTCACG CCGCGGGCTG AAATTCTCAA GATGTACGAA
AGCGGCCGCG GCTCGATCCG CATGCGCGCC GTGTACCGCG TCGAGGATGG CGACATCGTC
GTCACTGCGC TGCCGCACCA GGTCTCCGGG GCCAAAGTGC TGGAGCAGAT TGCCGCGCAG
ATGCAGGCCA AGAAGCTGCC GATGGTCGCC GACCTGCGCG ACGAGTCGGA CCACGAGAAC
CCATGCCGTA TTGTCATCAT CCCGCGATCC AACCGCGTCG ATGTCGACGA GCTGATGCAG
CACCTGTTCG CTACCACCGA CCTGGAAAGC ACCTATCGGG TCAACGTGAA TATCATCGGC
CTGGACGGCC GGCCGCAGTT GAAAAACCTG CGAACCATCT TGGTGGAGTG GCTGGAGTTC
CGCACCAATA CCGTTCGTCG CCGCCTGCAG CACCGTTTGG ATAAGGTCGA GAAGCGCCTG
CACCTGTTGG ACGGTTTGCT CACCGCATTC CTCAACCTGG ATGAAGTGAT CCACATCATC
CGTACTGAGG AATACCCCAA GCAGGCCCTG ATCGAACGTT TCGAGCTGAC CGAGATCCAG
GCTGACTACA TCCTCGAGAC CCGCCTGCGG CAGTTGGCGC GCCTGGAAGA GATGAAGATC
CGCGGTGAGC AGGATGAGTT GCTGAAGGAG CAAGCCAAGC TGCAGGCCTT GCTGGGGAGC
GAGGCCAAAC TGCGCAAGCT GGTGCGCAGC GAGCTGATCA AGGATGCCGA AACCTATGGC
GATGATCGTC GCTCGCCGAT CGTAGCGCGT GCCGAAGCCA AGGCCCTGTC GGAAAACGAG
CTGATGCCGA CCGAGCCCGT CACCGTGGTG CTGTCGGAGA AGGGCTGGGT GCGCTGCGCC
AAGGGCCACG ATATTGACGC CACTGGCCTT TCCTACAAGG CCGGCGACGG TTTCAAGGCT
GCTGCGGCTG GGCGTTCCAA CCAGTTTGCC GTGCTTATCG ATTCCACCGG TCGCAGCTAC
TCGCTGGCGG CCCACAGCCT GCCATCGGCA CGTGGCCAGG GCGAGCCGCT GACTGGCCGT
CTGACGCCGC CACCGGGGGC GACTTTCGAA TGTGTGTTGT TGCCTGACGA CGATGCGCTG
TACGTGGTGG CTTCGGATGC CGGTTACGGT TTCGTGGTCA AGGGTGAAGA CCTGCAGGCC
AAGAACAAGG CCGGCAAAGG CCTGCTCAGC TTGCCCAACG GGGCCAAGGT CATGACCCCG
CGCCCAGTGG CTGATCGCGA GCAGGACTGG TTGGCGGCCG TGACCACCGA AGGCCGCTTG
CTGGTGTTCA AGGTCAGCGA CTTGCCGCAG CTGGGTAAAG GCAAGGGCAA CAAGATCATT
GGCGTGCCGG GTGACCGGGT GGCCAGCCGT GAAGAATTTG TTACCGATCT GGCCGTGATT
CCCGAAGGCG GGACCCTTGT ATTGCAGGCC GGCAAGCGTA CCCTGTCTTT GAAGGCGGAC
GACCTGGAGC ACTACAAGGG CGAGCGCGGT CGGCGCGGCA GCAAGCTGCC ACGCGGGTTC
CAGCGCGTCG ATGGGTTGCA GGTGGAAGTG CCGACATAA
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| Protein sequence | MSDSLELSLD GVERRSLAEF TEQAYLNYSM YVIMDRALPH IGDGLKPVQR RIVYAMSELG
LDADAKHKKS ARTVGDVLGK FHPHGDSACY EAMVLMAQPF SYRYTLVDGQ GNWGAPDDPK
SFAAMRYTEA RLSRYAEVLL SEVGQGTVDW VPNFDGTLQE PAVLPARLPN ILLNGTTGIA
VGMATDVPPH NLREVASACV RLLDEPKATI EQLCEHIQGP DYPTEAEIVT PRAEILKMYE
SGRGSIRMRA VYRVEDGDIV VTALPHQVSG AKVLEQIAAQ MQAKKLPMVA DLRDESDHEN
PCRIVIIPRS NRVDVDELMQ HLFATTDLES TYRVNVNIIG LDGRPQLKNL RTILVEWLEF
RTNTVRRRLQ HRLDKVEKRL HLLDGLLTAF LNLDEVIHII RTEEYPKQAL IERFELTEIQ
ADYILETRLR QLARLEEMKI RGEQDELLKE QAKLQALLGS EAKLRKLVRS ELIKDAETYG
DDRRSPIVAR AEAKALSENE LMPTEPVTVV LSEKGWVRCA KGHDIDATGL SYKAGDGFKA
AAAGRSNQFA VLIDSTGRSY SLAAHSLPSA RGQGEPLTGR LTPPPGATFE CVLLPDDDAL
YVVASDAGYG FVVKGEDLQA KNKAGKGLLS LPNGAKVMTP RPVADREQDW LAAVTTEGRL
LVFKVSDLPQ LGKGKGNKII GVPGDRVASR EEFVTDLAVI PEGGTLVLQA GKRTLSLKAD
DLEHYKGERG RRGSKLPRGF QRVDGLQVEV PT
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