Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4784 |
Symbol | psd |
ID | 5195054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5358313 |
End bp | 5359176 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640589269 |
Product | phosphatidylserine decarboxylase |
Protein accession | YP_001270088 |
Protein GI | 148549986 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0688] Phosphatidylserine decarboxylase |
TIGRFAM ID | [TIGR00163] phosphatidylserine decarboxylase precursor |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCCC GTCTGTTCAT CATCAGCCAG TACCTGCTGC CGCACCACCT GCTGTCGCGG CTGGCCGGCT GCATCGCCGA GTGCCGCGTG CGCTGGTTCA AGAACGCCTT CACCGCATGG TTCGCCAAGC GCTACCAGGT GAACATGAGC GAGGCGCTGG TCGAAGACCT GAGCGCTTAC GAGCACTTCA ATGCGTTCTT CACCCGCGCC TTGAAACCTG GTGCCCGTCC GCTGGACGAA ACCCCGGGCG CCATCCTGTG CCCGGCCGAC GGTGCGGTCA GCCAGCTTGG CCCGATCGAG CACGGTCGTA TCTTCCAGGC CAAAGGCCAC GGTTTCAGCG CGCAAGAGCT GCTGGGCGGT GATCCGGCCA TGGCCGCGCC GTTCATGGGC GGCGAGTTTG CCACCATCTA CCTGTCGCCC AAGGACTACC ACCGCGTGCA CATGCCGCTG GCCGGCACCC TGCGCGAAAT GGTCTATGTG CCGGGCCGCC TGTTCTCGGT CAACCAGACC ACCGCAGAGA ATGTCCCCGA GCTGTTCGCT CGCAACGAGC GCGTGGTCTG CCTGTTCGAT ACAGAGCGTG GGCCAATGGC TGTGGTACTG GTCGGCGCGA TGATCGTCGC CTCGATCGAA ACGGTATGGG CCGGGCTGGT CACGCCGCCC AAACGTGAGC TGAAGACCTT CCGCTACGAC GAAGCCAGCC GCACGCCGAT CCACCTGGAG AAAGGTGCCG AACTAGGCCG CTTCAAGCTG GGTTCGACCG CCATCGTGCT GTTCGGGCCG GAGCAGGTGA AGTGGGCTGA GAGCCTGGGT GCGGGTTCTG CAGTGCGCAT GGGGCAGCAG CTGGCGGCGC CTGTGCAGGC TTGA
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Protein sequence | MKSRLFIISQ YLLPHHLLSR LAGCIAECRV RWFKNAFTAW FAKRYQVNMS EALVEDLSAY EHFNAFFTRA LKPGARPLDE TPGAILCPAD GAVSQLGPIE HGRIFQAKGH GFSAQELLGG DPAMAAPFMG GEFATIYLSP KDYHRVHMPL AGTLREMVYV PGRLFSVNQT TAENVPELFA RNERVVCLFD TERGPMAVVL VGAMIVASIE TVWAGLVTPP KRELKTFRYD EASRTPIHLE KGAELGRFKL GSTAIVLFGP EQVKWAESLG AGSAVRMGQQ LAAPVQA
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