| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4778 |
|---|
| Symbol | |
|---|
| ID | 5192663 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5351854 |
|---|
| End bp | 5352396 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640589263 |
|---|
| Product | oligoribonuclease |
|---|
| Protein accession | YP_001270082 |
|---|
| Protein GI | 148549980 |
|---|
| COG category | [A] RNA processing and modification |
|---|
| COG ID | [COG1949] Oligoribonuclease (3'->5' exoribonuclease) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.89409 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACC CACAGAACCT GATCTGGATC GACCTGGAAA TGACCGGCCT GGATCCGGAC
AGCGACGTCA TCATCGAAAT GGCCACCATC GTTACCGACA GCGAGCTCAA TACCTTGGCC
GAAGGCCCGG TAATCGCCAT CCACCACAGT GACGAAGTGC TGGCGCGCAT GGACGAGTGG
AACACCCGCA CCCATGGCGC TTCGGGGCTG ACCCAGCGCG TGCGCGAGAG CAAGGTCAGC
ATGGCCGAAG CCGAGGCACA GACCATCGCC TTCCTCGAGC AGTGGGTGCC TAAAGGCAAG
TCGCCGATCT GCGGCAACAG CATCTGCCAG GATCGTCGTT TCCTCTACCG CCACATGCGC
AACCTGGAAA ACTACTTCCA CTACCGCAAC CTGGATGTCT CCACCCTCAA GGAGCTGGCC
GCGCGCTGGG CGCCGGACGT GCGTGACAGC TTCAAGAAGG GCAATACCCA CCTGGCGCTG
GACGATATCC GCGAATCGAT CGCCGAACTG CGTCACTATC GCGAGCACTT CATCAAGCTG
TGA
|
|---|
| Protein sequence | MQNPQNLIWI DLEMTGLDPD SDVIIEMATI VTDSELNTLA EGPVIAIHHS DEVLARMDEW
NTRTHGASGL TQRVRESKVS MAEAEAQTIA FLEQWVPKGK SPICGNSICQ DRRFLYRHMR
NLENYFHYRN LDVSTLKELA ARWAPDVRDS FKKGNTHLAL DDIRESIAEL RHYREHFIKL
|
|---|
| |