| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4760 |
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| Symbol | |
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| ID | 5192283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5328648 |
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| End bp | 5331221 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640589243 |
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| Product | ribonuclease R |
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| Protein accession | YP_001270064 |
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| Protein GI | 148549962 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.334111 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.140366 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATT GGCAATCCCT CGATCCCGAG GCCGCTCGCG AAGCGGAAAA ATACGACAAC
CCCATTCCCA GCCGTGAGCT GATCCTGCAG CGTCTCGCCG ACCGAGGCGA ACCTGCTGCC
CGCGAGGAGC TGGCAAAAGA GTTCGGTCTG TATGAAGAAG ACCAGATCGA AGCCCTGCGC
CGCCGCCTGC GTGCCATGGA GCGCGATGGC CAGCTTATCT ATACCCGGCG CGGCACTTAT
GCCCCGGTAG ACAAGCTGGA CCTGATCTGC GGTCGCGTCT CCGGCCACCG CGACGGCTTC
GGCTTCCTTA TTCCCGATGA CGGCAGCGAA GACCTGTTCC TCAGCCCGTC GCAGATGCGA
CTGGTGTTCG ACGGCGACCG TGGCCTGGCC CGCGTCTCCG GTGTCGACCG CCGTGGCCGC
CGTGAAGGCG TGCTGGTCGA AGTCATCTCC CGTGCCCACG AAAGCGTGGT CGGCCGCTAT
TTCGAAGAAG GCGGCATCGG TTACGTAACC CCGGACAACC CGAAGATCCA GCAGGAAGTG
CTGGTGACTG CCGGGCGTAA CGGCGGTGCC AAGATCGGCC AGTTCGTCGA GATCAAGATC
ACCCACTGGC CAACGCCGCG CTTCCAGCCG CAAGGCGATG TGGTCGAGGT CATCGGCAAC
TACATGGCAC CAGGCATGGA AATCGACGTT GCCCTGCGCA GCTACGACAT TCCGCACGTC
TGGCCCAACG ATGTGGTCAA GGAGGCACGC AAGTTCCGCT CCGAAGTCGA GGAGAAGGAC
AAAGAGAAGC GTGTCGACCT GCGCCATCTG CCGTTCGTCA CCATCGACGG TGAAGACGCC
CGCGACTTCG ACGATGCCGT TTATTGCGAA CCGCTGGGCA AGCTGCGTCT GTTCTCCGGT
GGCTGGCGCC TGTACGTGGC CATCGCTGAC GTGTCCAGCT ACGTGCGTCT GGGCTCTGCC
CTGGATGTCG AAGCCCAGCA GCGCGGCAAC TCGGTTTACT TCCCCGAGCG CGTGGTGCCG
ATGCTCCCCG AAGAGCTGTC CAACGGCCTG TGCTCGCTGA ACCCGCATGT CGACCGGTTG
GCCATGGTCT GTGAAATGAC CATGAACAAA GCCGGCCAGA TGGTCGACTA CCAGTTCTAC
GAAGGCGTAA TCCACTCCCA TGCCCGCCTG ACCTACAACA AGGTCAGCAG CATGCTCGAG
CACTCGCGTA CCCGTGAGGG CAAGGCGCTG CGCGAGGAAT ACAAGGAAGT CGTGCCCGAC
CTGAAGAACC TGTACAACCT GTACAAGGTG CTGGTGGAGG CGCGTCACAC ACGTGGCGCC
ATCGACTTCG AAACCCAGGA AACCCGCATC ATCTTCGGCG ACGAGCGCAA GATCGCCGAA
ATTCGCCCGA CCGTGCGCAA CGATGCTCAC AAGCTGATCG AGGAATGCAT GCTGGCGGCC
AACGTGGCCA CGGCCGAGTT CCTGCAGAAG CACGGCGTAC CGGCCCTGTA CCGCGTGCAC
GATGGCCCGC CGCCGGAGCG CCTGGAAAAA CTGCGCGCCT TCCTCGGCGA GCTGGGTCTG
AGCCTGCACA AGGGCAAGGA CCCGTCACCG AAGGATTACC AGGCCCTGCT GGCGAGCATC
GCCGGTCGCC CGGACTTCCA TCTGATCCAG ACGGTGATGC TGCGCTCGCT GAGCCAGGCC
GTGTACAGCA CCGAGAACAA CGGCCACTTC GGCCTGAACT ACGAGGCGTA CACCCACTTC
ACCTCGCCGA TCCGTCGTTA CCCGGACCTG CTGGTGCATC GCGCCATCCG CAGCATCATC
CGCTCCAAGG TCGATACCCC GCACGTCAAG CGTGCCGGCG CCATGAGCAT CCCCAAGGCG
CGTATCTACC CGTACGACGA AAACACCCTG GAGCAACTTG GCGAGCAGTG CTCGATGACC
GAGCGCCGGG CCGACGAGGC CACCCGTGAC GTGGTCAACT GGCTCAAGTG CGAGTTCATG
AAAGATCGCG TGGGCGAGAC CTTCCCGGGT GTGATCACGG CGGTGACCGG TTTCGGCCTG
TTCGTCGAGC TGACCGATAT CTATGTAGAG GGCCTGGTGC ACGTCAGTGC GTTGCCAGGT
GACTACTACC ACTTCGACCC GGTACACCAT CGCCTGGCTG GCGAGCGCAC CGGTCGCAGC
TTCCGCTTGG GCGACACCAT CGAAGTCAAG GTCATGCGTG TTGATCTGGA TGAGCGCAAG
ATCGACTTCG AAGTGTCGGA AAAGACCCTC GCCGCACCGA TCGGCCGCAA GCAGCGTGGC
GCCGCGCCGG TTGCCGAAAA AGCCGAGCAG CAGCCGGCAA CCGAAGCGAA AGCCACGCCC
AAGCCGCGCA GCCGCAAAAG CGAAGCGTCC GAAGCGTACT TCCCCAAGGA TGCTGTGCAG
CGAAACGCTG AAGTGCGTAA AAGCCGCGAG ATGAAAAAAG CGCTGATGAC CGACGCGCGC
AGCAGTGCTG GCAGCAAATC GGAGAAAGGT GGCAAGCCGT CCGGCAAACC GACCAAGCAC
CGTAAAGGCC CGCCGAAGTC CGGCGCACCA CGCAAAAACA AGAGCAATTC ATGA
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| Protein sequence | MADWQSLDPE AAREAEKYDN PIPSRELILQ RLADRGEPAA REELAKEFGL YEEDQIEALR
RRLRAMERDG QLIYTRRGTY APVDKLDLIC GRVSGHRDGF GFLIPDDGSE DLFLSPSQMR
LVFDGDRGLA RVSGVDRRGR REGVLVEVIS RAHESVVGRY FEEGGIGYVT PDNPKIQQEV
LVTAGRNGGA KIGQFVEIKI THWPTPRFQP QGDVVEVIGN YMAPGMEIDV ALRSYDIPHV
WPNDVVKEAR KFRSEVEEKD KEKRVDLRHL PFVTIDGEDA RDFDDAVYCE PLGKLRLFSG
GWRLYVAIAD VSSYVRLGSA LDVEAQQRGN SVYFPERVVP MLPEELSNGL CSLNPHVDRL
AMVCEMTMNK AGQMVDYQFY EGVIHSHARL TYNKVSSMLE HSRTREGKAL REEYKEVVPD
LKNLYNLYKV LVEARHTRGA IDFETQETRI IFGDERKIAE IRPTVRNDAH KLIEECMLAA
NVATAEFLQK HGVPALYRVH DGPPPERLEK LRAFLGELGL SLHKGKDPSP KDYQALLASI
AGRPDFHLIQ TVMLRSLSQA VYSTENNGHF GLNYEAYTHF TSPIRRYPDL LVHRAIRSII
RSKVDTPHVK RAGAMSIPKA RIYPYDENTL EQLGEQCSMT ERRADEATRD VVNWLKCEFM
KDRVGETFPG VITAVTGFGL FVELTDIYVE GLVHVSALPG DYYHFDPVHH RLAGERTGRS
FRLGDTIEVK VMRVDLDERK IDFEVSEKTL AAPIGRKQRG AAPVAEKAEQ QPATEAKATP
KPRSRKSEAS EAYFPKDAVQ RNAEVRKSRE MKKALMTDAR SSAGSKSEKG GKPSGKPTKH
RKGPPKSGAP RKNKSNS
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