| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4730 |
|---|
| Symbol | |
|---|
| ID | 5192165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5298102 |
|---|
| End bp | 5298890 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640589213 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001270034 |
|---|
| Protein GI | 148549932 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00390984 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCGCA AATACCTTGA TATCCCCCAG TTCACCCAAC TGCCGGCCTC GGTGTACTTC
CGCCACGACG AGTTCGTTGC CGACACCCAC AGCGCCGTGC ACCAACACGG CTGGGGCCAA
CTGAACTACA CCGCCCACGG CGTAATGCAT CTGGATGTGG CCGGCCAGCG CTTCCTGTCG
CCGCCGCACT ACGCCGTTTG GGTGCCGCCC GACACCGAGC ATGGCTGCTA CAATCCCCAG
GCCATCGTCT ACCGTTCCAT CTACCTCGAC CGCAGCCTGT GCGCAGCGCT GCCATCGCAC
CCGTGCAGCC TGATGATCAG TGACATCCTC AAGGCTATCC TCGGTGACTT CGCCCGGCGC
AATCTCAAGG TGGCCGAGGA CGAGCGTGAC CAGCGCCTGG TACAGGTACT GCTTGACCAG
TTGCTGCTGG CGCCCACTCT GGCCTGCTAC TTGCCGTTTG CCCACAGCGA TGGCTTGCGC
CAGGTGCTCG ACGCGCTCAG CGCCGAGCCG GGGGACAACC GCCCGCTGGC CGACTGGGCC
GCCCGCGTGC ACGTCAGCGA ACGCACCCTG GCCCGCCAGT TTCTGCGCGA GCTGGGCATC
AGCTTTGGCG AATGGCGCCT GCGCCTGCGT TTTCTGCGTG CCATCGAAGC GCTGGAAGCC
GGCCTGCCGA TTCAGGCCAT CGCCTTCGAC CTCGGCTACA GCAGCGCTTC GGCCTTCATC
GCCATGTTCC AGCGTCAGGC CCGGTGTACG CCCGAGCAGT ACCGCCGGCA GGCGCGGGCG
GGGCACTGA
|
|---|
| Protein sequence | MPRKYLDIPQ FTQLPASVYF RHDEFVADTH SAVHQHGWGQ LNYTAHGVMH LDVAGQRFLS
PPHYAVWVPP DTEHGCYNPQ AIVYRSIYLD RSLCAALPSH PCSLMISDIL KAILGDFARR
NLKVAEDERD QRLVQVLLDQ LLLAPTLACY LPFAHSDGLR QVLDALSAEP GDNRPLADWA
ARVHVSERTL ARQFLRELGI SFGEWRLRLR FLRAIEALEA GLPIQAIAFD LGYSSASAFI
AMFQRQARCT PEQYRRQARA GH
|
|---|
| |