| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4720 |
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| Symbol | |
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| ID | 5193051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5288480 |
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| End bp | 5289934 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640589203 |
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| Product | inner-membrane translocator |
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| Protein accession | YP_001270024 |
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| Protein GI | 148549922 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
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| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.149683 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0227032 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCTGG CAACCCACGC CAGCGAGGGC GAATTCTTTC TCACCGCCAA GCCCGCCGAG
CAAGGCCGCC TGCTCGAAGG TTGGGCAGCA CAACCCGATG CTGCGCGCCT GCCGCTGCTG
GAAAACCTGC GCCAAGGCCG CATCGCTGCC GACGACACCC GCAAGGTGCG CCTGAACAAC
CGCCTGCGCG GCCTGATCGA CAACGCCCTG GCCAGCCATC AGTTGCTCAG CGACAGCAGC
GACACCCGCC TGGCCGCGGC CCAGCAATTA CAGAAAAGCG CACAGCCCGC ACAAATGGCC
TTCCTCGACC GGCGCTTCGC CGCCGAGCCG GACGCCGCTG TACAGGGCGC CCTCGGCCTG
GCCCTGGCCA ACCTGCAACT GGGCGCCAGC GAGCCCGCAG TGCGCCTGGC CGCCGTGCGC
CTGCTGGGTG AAACCGGCGA CCCGCTGGCC CGCACCCGCC TCGAAGCCCT GCTGCAGCCC
GATGCAGAAC TAGACCCGGG CGTGCGCACA GCCGCCGAAA CGAGCCTGGC CCAGGTCAAG
CGCAAACTGC TGGTAGGCGA ACTGCTCGGC CAGGCCTTCA GCGGCCTGTC GCTGGGTTCG
GTCCTGCTGC TGGCAGCGCT GGGCCTTGCG ATCACCTTCG GCCTGCTTGG GGTGATCAAC
ATGGCCCATG GCGAGATGTT GATGCTCGGC GCCTACAGCA CCTACATGGT CCAGGTACTG
CTGCAGCGCT TCGCCCCAGG CGCCATCGAG TTCTACCCGC TGATTGCCCT GCCGGTGGCG
TTCGCCGTCA GTGCCGGGGT AGGCATGGCG CTGGAGCGCA CGGTGATCCG CCACCTGTAC
GGCCGGCCAC TGGAAACCCT GCTGGCCACC TGGGGCATCA GCCTGATCCT GATCCAGGCC
ATCCGCCTGC TGTTCGGCGC GCAGAACGTC GAGGTGAGCA ACCCAGCCTG GCTGTCTGGC
GGCATCCAGC TGCTGCCCAA CCTGGTGCTG CCACACAACC GCCTGGTCAT CATCGGCTTC
GCCCTGGCCG TGGTGCTGCT CACCTGGCTG CTGCTCAACC GTACCCGGTT GGGCCTGAAC
GTGCGCGCAG TCACCCAGAA CCGCAACATG GCCGCCTGCT GCGGCGTGTC CACCGGGCGC
GTCGACATGC TCGCCTTTGG CCTTGGCTCG GGCATCGCAG GGCTCGGTGG CGTGGCCTTG
AGCCAGGTGG GCAATGTCGG CCCGGACCTG GGCCAAAGCT ACATCATCGA TTCATTCCTG
GTGGTGGTGC TCGGCGGCGT CGGGCAACTG GCCGGTAGCC TCTGGGCCGC GTTCGGCCTG
GGCATCGCCA ACAAGCTGCT GGAGCCGCAG ATCGGTGCCG TACTCGGCAA GATCCTCATC
CTTGCGTTGA TCATTCTGTT CATCCAGAAA CGCCCGCAAG GCCTGTTCGC CCTCAAGGGA
CGGGTAATCG ACTGA
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| Protein sequence | MPLATHASEG EFFLTAKPAE QGRLLEGWAA QPDAARLPLL ENLRQGRIAA DDTRKVRLNN
RLRGLIDNAL ASHQLLSDSS DTRLAAAQQL QKSAQPAQMA FLDRRFAAEP DAAVQGALGL
ALANLQLGAS EPAVRLAAVR LLGETGDPLA RTRLEALLQP DAELDPGVRT AAETSLAQVK
RKLLVGELLG QAFSGLSLGS VLLLAALGLA ITFGLLGVIN MAHGEMLMLG AYSTYMVQVL
LQRFAPGAIE FYPLIALPVA FAVSAGVGMA LERTVIRHLY GRPLETLLAT WGISLILIQA
IRLLFGAQNV EVSNPAWLSG GIQLLPNLVL PHNRLVIIGF ALAVVLLTWL LLNRTRLGLN
VRAVTQNRNM AACCGVSTGR VDMLAFGLGS GIAGLGGVAL SQVGNVGPDL GQSYIIDSFL
VVVLGGVGQL AGSLWAAFGL GIANKLLEPQ IGAVLGKILI LALIILFIQK RPQGLFALKG
RVID
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