| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4690 |
|---|
| Symbol | |
|---|
| ID | 5192323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5256386 |
|---|
| End bp | 5257102 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640589173 |
|---|
| Product | LrgB family protein |
|---|
| Protein accession | YP_001269994 |
|---|
| Protein GI | 148549892 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1346] Putative effector of murein hydrolase |
|---|
| TIGRFAM ID | [TIGR00659] conserved hypothetical protein TIGR00659 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.827168 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTCG ACTGGCAGGG CGCACTCGAT GCAGTCATTC ACCACCCATT GTTCGGTATT
GGCATCACGC TGGGGGCCTA CCAGGTAGTG CTGGCAGCCT ACGAGAAAAC CCGCTGGATC
TTCTTGCAAC CTGTATTGGT ATCGATGCTG CTGGTGATCG GTGTGTTGCT GCTGTGCGGC
ATCGATTACA GCGAATACCG CAAAAGCACC GAAATCATGA ACATCCTGCT GGGGCCTGCT
ACGGTGGCCC TGGCTGTGCC GCTCTACCTC AACCTGCGGC GTATCCGTCA GCTGTTCTGG
CCTACATTTA CTACGCTGGT AGTCGGAGGC CTGTTCGCCA CGCTCTGCTG CCTGGTGCTG
GGCTGGTGGT TCGGTGCCGA GCACATGATC CTGATGACCA TGGCGCCGAA GTCCGTCACC
TCGCCGATCG CCATGCTGGT GGCTGAGCAG ATTGGCGGCG TGGCGGCCCT GGCGGCAGTG
TTCGTGTTGA TTACCGGGGT GATTGGGGCG ATCTTCGGCC CGGCATTGCT GAGCCGCTTC
GGCGTGCACA GCCCTGAGGC GCGCGGCATG TCGCTGGGCG TGACCGCACA CGCAGTCGGC
ACTTCGGTGG CCCTGCAGGA AAGTGACGAA TGCGGCGCCT TTGCCGCGCT GGCGATGAGC
CTGATGGGGG TGGCTACAGC GGTGTTCCTG CCGCTGGCAG TCAGCCTGGT GGCTTGA
|
|---|
| Protein sequence | MMLDWQGALD AVIHHPLFGI GITLGAYQVV LAAYEKTRWI FLQPVLVSML LVIGVLLLCG
IDYSEYRKST EIMNILLGPA TVALAVPLYL NLRRIRQLFW PTFTTLVVGG LFATLCCLVL
GWWFGAEHMI LMTMAPKSVT SPIAMLVAEQ IGGVAALAAV FVLITGVIGA IFGPALLSRF
GVHSPEARGM SLGVTAHAVG TSVALQESDE CGAFAALAMS LMGVATAVFL PLAVSLVA
|
|---|
| |