Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4633 |
Symbol | |
ID | 5194005 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5198694 |
End bp | 5199395 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640589116 |
Product | GntR domain-containing protein |
Protein accession | YP_001269937 |
Protein GI | 148549835 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.320715 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000883916 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAACCCG AACACGCGCG CAAACGCGGC CACAGCCGTG CCCACGACCT GGTTTCCAGC CTGACCCAGC AGATTTTGCT GGGCACCTTC AAACCAGGCG ACAAACTGCC TTCGGAAAAC ACCTTGGTGC GCGAGCACGG GGTCAGCCGC ACGGTGGTTC GCGAAGCCTT GTCGAAGCTG CAGGCCTCTG GGCTGGTGGA GCCGCGCCAC GGGATCGGTA CGTTCGTAAT GGAGCGCCAG GCCCAGGCCG GGCTGCGCGT TGCGGCGGAG AGCGCGGCGA ATGTGCGCGA TCTGCTGGAG CTGCGTATTG GCCTTGAGGG CCAGGCTGCC GCGCTGGCCG CACTGCGTCG TGACGAAGGG CAACTGGCGC GCATGCGCCA GGCGCTGGAT GACTATCAGG ACCTGGCCGC TGCCGGCGAC AGCTGCATCG AAGCCGACCG GCGCTTTCAC CTGCTGATTG CCGAGGCCAC CGGCAATCTG TATTTCACCG AGATGCTGCT GCAACTGGGT AACGGCCTGA TACCGCGCAA CCGCATGGCC CTGGCCGAGC GCGCGGGGGC CAAGCTGGCG CGGCAAGCGT ACCTGGCCAA CCTGGAGCAT GAGGCGATCC TCAATGCCAT CCGCCGACAA GACCCGGATG CCGCTCGGGC GGCAGTGTGC CTGCACCTGT CCAACAGCCG AGACCGGCTA CTGCCGGACT GA
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Protein sequence | MEPEHARKRG HSRAHDLVSS LTQQILLGTF KPGDKLPSEN TLVREHGVSR TVVREALSKL QASGLVEPRH GIGTFVMERQ AQAGLRVAAE SAANVRDLLE LRIGLEGQAA ALAALRRDEG QLARMRQALD DYQDLAAAGD SCIEADRRFH LLIAEATGNL YFTEMLLQLG NGLIPRNRMA LAERAGAKLA RQAYLANLEH EAILNAIRRQ DPDAARAAVC LHLSNSRDRL LPD
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