Gene Pput_4631 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4631 
Symbol 
ID5194647 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5195707 
End bp5197062 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content65% 
IMG OID640589114 
Productglucarate dehydratase 
Protein accessionYP_001269935 
Protein GI148549833 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID[TIGR03247] glucarate dehydratase 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.139469 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000950159 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATATGC AGACCAATCC CCCCGTACAT GCCAGCACCC CGGTGGTCAC CGACCTGCGC 
GTGGTCCCCG TGGCCGGCCA TGACAGCATG CTGCTCAACC TCAGTGGCGC CCATGGCCCG
TACTTCACCC GCAACGTGGT GGTGCTGCGC GACAGCGCCG GCAACACCGG CCTGGGTGAA
GTGCCCGGTG GCGAGAAGAT TCGCCAGACC CTGGAGGACG CCCGCAGCCT GGTGGTCGGC
CAGCCGATCG GCCATTATCA GCGTGTGCTC AATGCCATGC GCCAGACCTT CGCCAACCGC
GACTCGGCGG GCCGCGGCCT GCAGACCTTC GACCTGCGTA TCGCCGTGCA TGCGGTGACG
GCCATTGAGT CGGCATTGCT CGACCTGCTC GGCCAGCACC TGAATGTGCC GATGGCAGCA
TTGCTGGGCG AGGGGCAGCA ACGTGATGCG GTGAAGATGC TCGGCTATCT GTTCTACATC
GGCGACCGCC AGCAGACCGA CCTGGCCTAC CGCAACGAAG CCGACAGCGA TGACGACTGG
TTCCGCCTGC GCCACGAAAA GGCCCTGACC CCGGAAGCAG TGGTGCGGCT GGCCGAGGCC
GCCAAGGCGC GCTATGGCTT CAGCGACTTC AAGCTCAAGG GCGGCGTGCT GCGTGGTGAA
GAAGAGATGG AGGCCGTGAC AGCGCTGGCC GAACGCTTCC CCGAAGCGCG CATCACGCTC
GACCCCAATG GCGCGTGGTC GCTGAAGGAG GCCATCGCCC TGTGCCGTGA CAAGCACAAT
GTGCTGGCCT ACGCCGAAGA CCCCTGTGGC GCCGAGAACG GTTACTCGGG CCGCGAGGTG
ATGGCCGAGT TCCGCCGCGC CACCGGGCTG CCCACTGCGA CCAACATGAT CGCTACCGAC
TGGCGACAGA TGGGCCATGC CATTCAGTTA CAGTCGGTGG ACATTCCGCT GGCCGACCCT
CACTTCTGGA CCTTGCAGGG TTCGGTTCGG GTGGCGCAGA TGTGCAACGA CTGGGGGCTG
ACCTGGGGTT CTCATTCCAA TAACCACTTC GACATTTCGC TGGCGATGTT CACCCAGGTG
GCGGCTGCGG CGCCGGGTGA AATCACTGCG ATCGATACCC ACTGGATCTG GCAGGATGGC
CAGCGGCTGA CGCGTGATCC GCTGCGCATT GTCGATGGGC ATGTGCGGGT ACCGGCGCGG
CCGGGCCTGG GCGTGGAACT GGACGAAGAC CAGCTGGCCA AGGCCCATGA GTGCTACCGC
AACATGGGGC TGGGCGCGCG CGATGACAGC GTGGCGATGC AGTTCCTGAT CTCGGGTTGG
AGCTTCGATA ACAAACGACC TTGCCTGGTA CGGTAA
 
Protein sequence
MNMQTNPPVH ASTPVVTDLR VVPVAGHDSM LLNLSGAHGP YFTRNVVVLR DSAGNTGLGE 
VPGGEKIRQT LEDARSLVVG QPIGHYQRVL NAMRQTFANR DSAGRGLQTF DLRIAVHAVT
AIESALLDLL GQHLNVPMAA LLGEGQQRDA VKMLGYLFYI GDRQQTDLAY RNEADSDDDW
FRLRHEKALT PEAVVRLAEA AKARYGFSDF KLKGGVLRGE EEMEAVTALA ERFPEARITL
DPNGAWSLKE AIALCRDKHN VLAYAEDPCG AENGYSGREV MAEFRRATGL PTATNMIATD
WRQMGHAIQL QSVDIPLADP HFWTLQGSVR VAQMCNDWGL TWGSHSNNHF DISLAMFTQV
AAAAPGEITA IDTHWIWQDG QRLTRDPLRI VDGHVRVPAR PGLGVELDED QLAKAHECYR
NMGLGARDDS VAMQFLISGW SFDNKRPCLV R