Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4631 |
Symbol | |
ID | 5194647 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5195707 |
End bp | 5197062 |
Gene Length | 1356 bp |
Protein Length | 451 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640589114 |
Product | glucarate dehydratase |
Protein accession | YP_001269935 |
Protein GI | 148549833 |
COG category | [M] Cell wall/membrane/envelope biogenesis [R] General function prediction only |
COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
TIGRFAM ID | [TIGR03247] glucarate dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.139469 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.000950159 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAATATGC AGACCAATCC CCCCGTACAT GCCAGCACCC CGGTGGTCAC CGACCTGCGC GTGGTCCCCG TGGCCGGCCA TGACAGCATG CTGCTCAACC TCAGTGGCGC CCATGGCCCG TACTTCACCC GCAACGTGGT GGTGCTGCGC GACAGCGCCG GCAACACCGG CCTGGGTGAA GTGCCCGGTG GCGAGAAGAT TCGCCAGACC CTGGAGGACG CCCGCAGCCT GGTGGTCGGC CAGCCGATCG GCCATTATCA GCGTGTGCTC AATGCCATGC GCCAGACCTT CGCCAACCGC GACTCGGCGG GCCGCGGCCT GCAGACCTTC GACCTGCGTA TCGCCGTGCA TGCGGTGACG GCCATTGAGT CGGCATTGCT CGACCTGCTC GGCCAGCACC TGAATGTGCC GATGGCAGCA TTGCTGGGCG AGGGGCAGCA ACGTGATGCG GTGAAGATGC TCGGCTATCT GTTCTACATC GGCGACCGCC AGCAGACCGA CCTGGCCTAC CGCAACGAAG CCGACAGCGA TGACGACTGG TTCCGCCTGC GCCACGAAAA GGCCCTGACC CCGGAAGCAG TGGTGCGGCT GGCCGAGGCC GCCAAGGCGC GCTATGGCTT CAGCGACTTC AAGCTCAAGG GCGGCGTGCT GCGTGGTGAA GAAGAGATGG AGGCCGTGAC AGCGCTGGCC GAACGCTTCC CCGAAGCGCG CATCACGCTC GACCCCAATG GCGCGTGGTC GCTGAAGGAG GCCATCGCCC TGTGCCGTGA CAAGCACAAT GTGCTGGCCT ACGCCGAAGA CCCCTGTGGC GCCGAGAACG GTTACTCGGG CCGCGAGGTG ATGGCCGAGT TCCGCCGCGC CACCGGGCTG CCCACTGCGA CCAACATGAT CGCTACCGAC TGGCGACAGA TGGGCCATGC CATTCAGTTA CAGTCGGTGG ACATTCCGCT GGCCGACCCT CACTTCTGGA CCTTGCAGGG TTCGGTTCGG GTGGCGCAGA TGTGCAACGA CTGGGGGCTG ACCTGGGGTT CTCATTCCAA TAACCACTTC GACATTTCGC TGGCGATGTT CACCCAGGTG GCGGCTGCGG CGCCGGGTGA AATCACTGCG ATCGATACCC ACTGGATCTG GCAGGATGGC CAGCGGCTGA CGCGTGATCC GCTGCGCATT GTCGATGGGC ATGTGCGGGT ACCGGCGCGG CCGGGCCTGG GCGTGGAACT GGACGAAGAC CAGCTGGCCA AGGCCCATGA GTGCTACCGC AACATGGGGC TGGGCGCGCG CGATGACAGC GTGGCGATGC AGTTCCTGAT CTCGGGTTGG AGCTTCGATA ACAAACGACC TTGCCTGGTA CGGTAA
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Protein sequence | MNMQTNPPVH ASTPVVTDLR VVPVAGHDSM LLNLSGAHGP YFTRNVVVLR DSAGNTGLGE VPGGEKIRQT LEDARSLVVG QPIGHYQRVL NAMRQTFANR DSAGRGLQTF DLRIAVHAVT AIESALLDLL GQHLNVPMAA LLGEGQQRDA VKMLGYLFYI GDRQQTDLAY RNEADSDDDW FRLRHEKALT PEAVVRLAEA AKARYGFSDF KLKGGVLRGE EEMEAVTALA ERFPEARITL DPNGAWSLKE AIALCRDKHN VLAYAEDPCG AENGYSGREV MAEFRRATGL PTATNMIATD WRQMGHAIQL QSVDIPLADP HFWTLQGSVR VAQMCNDWGL TWGSHSNNHF DISLAMFTQV AAAAPGEITA IDTHWIWQDG QRLTRDPLRI VDGHVRVPAR PGLGVELDED QLAKAHECYR NMGLGARDDS VAMQFLISGW SFDNKRPCLV R
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