| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4629 |
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| Symbol | |
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| ID | 5195421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5193531 |
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| End bp | 5194508 |
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| Gene Length | 978 bp |
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| Protein Length | 325 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640589112 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding |
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| Protein accession | YP_001269933 |
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| Protein GI | 148549831 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.088685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000328227 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTTCTC AATGCCGGAA GCCCGCGATG ACTCACACCC CGATTGAAGT GCTGCTGACC
CAGCCCGTAC CCGAGGCGAT CGATGCCCAA CTGGTCAGCG CCTACCACGT GCATCGGTTG
TACCAGCAGC ACAACCCGCA ACAGCTGCTG GACGAAGCCG CACCGCGCAT CCGCGGCGTG
GTCACCGGCG GTGCCAAAGG CCTGTCTACC GCGCTGATGG ACCAGTTGCC TGCCCTTGAG
ATCATCGCCA TCAGTGGCAT CGGTACCGAT GCGGTGGATC TGCGCCATGC GGCCAGCCGC
GGCATCCATG TCACCACCAC CCCGGGGGTG TTGACGGCCG ACGTTGCCGA CCTGGCCATG
GGGTTGATCA TCAGCAGCCT GCGTCGCCTG GGCGAGGGGG AGCGGCTGGT GCGCGATGGC
TTGTGGGGCA AGGTCGACCT GCCGCTGGCG CGCAGGGTCA GTGGCTGCGC GCTGGGCATC
GTCGGCCTTG GCCAGGTGGG CAAGGCCATC GCTCGCCGTG CCGCCGCCTT CGACATGAGC
ATCGCCTACA ACGGCCGGCG CGAGCAGCCA GAAACGGGCT ATCGCTATGA GCCGGATCTG
GTTGAGTTGG CGCGCTCGGT GGATGTCCTG GTCGTGGCCG CTTCTGCTGA CGGCGGGCAA
GTGCTGGTGA CGGCCGAGGT GCTGGAGGCG CTGGGGCCTC AGGGTTACCT GGTCAATGTG
GCACGTGGCA AGTTGGTCGA TGAAGACGCG CTGGTGGAAG CGTTGCGCGA GCAGCGTATC
GCCGGGGCAG GGCTGGATGT ATTTGTCGAT GAACCACAGG TGCCGCCGGC ATTGCTGGAC
CTGAACCAGG TCAGCCTGCA ACCGCACCGG GGCAGCGCGA CGCTGCAGAC CCGACTGGAG
ATGGGGCGCA TGGTGCTGGA CAACCTTCAG GCCTGTTTCC GAGGTGAAGT GCCACCGAAT
CGGGTGATCG ACAGTTAG
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| Protein sequence | MSSQCRKPAM THTPIEVLLT QPVPEAIDAQ LVSAYHVHRL YQQHNPQQLL DEAAPRIRGV
VTGGAKGLST ALMDQLPALE IIAISGIGTD AVDLRHAASR GIHVTTTPGV LTADVADLAM
GLIISSLRRL GEGERLVRDG LWGKVDLPLA RRVSGCALGI VGLGQVGKAI ARRAAAFDMS
IAYNGRREQP ETGYRYEPDL VELARSVDVL VVAASADGGQ VLVTAEVLEA LGPQGYLVNV
ARGKLVDEDA LVEALREQRI AGAGLDVFVD EPQVPPALLD LNQVSLQPHR GSATLQTRLE
MGRMVLDNLQ ACFRGEVPPN RVIDS
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