Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4614 |
Symbol | |
ID | 5194277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5166459 |
End bp | 5168831 |
Gene Length | 2373 bp |
Protein Length | 790 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640589097 |
Product | EcoEI R domain-containing protein |
Protein accession | YP_001269918 |
Protein GI | 148549816 |
COG category | [V] Defense mechanisms |
COG ID | [COG4096] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000837819 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGACAAGA ATTCACTGAC TGAGCGCGAC ATCTGCAGCA AATACATCAC ACCGGCCATC ACCGCGGCGG GCTGGGATTT GCACAAGCAG GTTCGTGAGG AAGTCAGCTT TACCAAGGGG CGCATCATCG TCCGTGGCAA GCTGCACAGC CGAGGCGAAT CGCGCCGCGC CGACTACATC CTGTATCACC AGGCCAACCT GCCGCTGGCG GTTATTGAGG CCAAGGACAA CAAGCACGCT CTCGGCGCCG GCATGCAGCA GGCGCTCGGT TATGCCGAGG CGCTGGATGT GCCGTTCGTG TTCTCCAGCA ACGGTGACGG TTTTCTCTTC CATGATCGCA GTGGCACCGG CGCGCAGAAG GAAACCGAGC TGAGCCTGGA GCAGTTCCCC AGTCCCGAGG AGCTGTGGCA GCGCTACTGC CAGTGGAAGG ACCTCAGCGG CGAAAGCCAG CAGAAAGCCG AAGCCCCGTA TTACGACGAC GGCTCGGGGC GCATGCCGCG CTACTACCAG ATGAACGCCA TCAACCGTAC CGTTGAGGCC GTGGCGCGCG GGCAGGATCG CATCCTGCTG GTCATGGCCA CCGGCACCGG CAAGACGTAC ACTGCCTTCC AGATCATCTG GCGCTTGTGG AAGTCCGGGC AGAAGAAACG CATCCTCTTC CTCGCCGACC GCAACATCCT CGTCGACCAG ACCAAGAACA ACGACTTCAA GCCCTTCGGC CAGGCGATGA CCAAGATTGC CAAACGGCAG ATCGAAAAGT CCTACGAAAT CTACCTGTCG CTGTATCAGG CCGTGACCGG CAATGAAGAA GAGAAGAATG TCTACAAGCA GTTTTCCCGC GACTTCTTCG ACCTCGTGGT GATCGACGAA TGCCACCGAG GCAGCGCCTC CGAAGACTCG GCCTGGCGCG AGATTCTCGA CTACTTCTCC GGTGCCACCC ACATCGGCCT GACCGCTACG CCGAAGGAGA CCAAAGAGGT TTCCAGCATC ACCTACTTCG GTGAGCCGGT GTACAGCTAC ACCCTCAAGC AAGGCATCGA AGATGGCTTC CTCGCCCCGT ACAAAGTGGT GCGCATCGAC TTCGACAAAG ACCTGCAAGG CTGGCGCCCG CCCAAGGGCA CGCGCGACAA GAACGGTGAG GTGATCGAAG ACCGCGTCTA TGACCTCAAC GACATGGACC GCGACCTGGT GATCGAGGCG CGTACCCAGT TGGTCGCCCG CAAGGTCACC GAATACCTGA CCGCCACCGA CCCCTTTCAG AAAACCATCA TCTTCTGCGA CGACATTGAC CACGCCGAGC GCATGCGCCA GGCCCTGGTC AACCTCAACC CCAAGCGCGT TGAGGAAAAC CGCAAATACG TGATGCGCAT TACCGGCGAC GACAAGGAAG GCAAGGCCGA GCTGGACAAC TTCATCAACC CCGAGTCGCG CTACCCGGTG ATCGCCGCCA CCAGCAAACT CATGACCACT GGCGTTGATG CCCAGACCTG CAAGCTGGTG GTGCTCGACC AGCACATCAA ATCCATGACC GAATTCAAGC AGATCATCGG TCGTGGCACC CGTATCAACG AGGATTACGG CAAGTACTGG TTCACCATCA TGGACTTCAA GAAAGCCACC GAACTGTTTG CCGACCCGGC CTTCGACGGG GAGCCGGTGG TAATCTACAA CCCCGAGGGC GACTCCTCAC CGGTGCCGCC GGAAGAAACC GAGGGCGAAG AGGGTGACGT GATCGACGGT GGCGCTGGGC CAACCGAAGG TGACGAAACC ACCGGCGGCG CTGACGACGA TGGCCGCAAG AAGCGCGTCA AATACGTGAT CAACAACGTC GCCGTGCACG TCATTGCCGA GCGCGTGCAG TACTACGGCC CGGACGGCAA GCTGATCACC GAATCGCTAC GCGACTACAC CCGCACCTGC GTTAAGAAAC AGTTTGCCTC GCTGGATGAC TTCCTGCGCC GCTGGAGCGA TGCCGAACAG AAGAAAGTCA TCATCGATGA ATTGGCCGCT CAAGGCGTGA TGTGGGAAGC CTTGGACGAC GAAGTCTCAG CCAAGCGCGG CCAGCCGCTC GATCCGTTCG ACCTGATCTG CCATATCGCC TTCGACCAGC CGCCGCTCAC CCGCAAGGAG CGCGCCGAGC AGGTGAAAAA ACGCAACTAC TTCGCCAAAT ACTCCGGCGC CGCCCGCCAG GTACTGGAAG CCCTGCTCGA CAAATACGCC GACACCGGCG TCGAGCACAT CGAAGACATC AAGATTCTTC AGCTGGCGCC ATTCAGCCAG ATCGGTGCGC CGATTGAGCT GGTCAAGGCC TTTGGCGGCA AACCGGGCTA TCAGCAGGCC ATTCAGGAGC TTGAGCGACA GCTCTACGGA TAA
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Protein sequence | MDKNSLTERD ICSKYITPAI TAAGWDLHKQ VREEVSFTKG RIIVRGKLHS RGESRRADYI LYHQANLPLA VIEAKDNKHA LGAGMQQALG YAEALDVPFV FSSNGDGFLF HDRSGTGAQK ETELSLEQFP SPEELWQRYC QWKDLSGESQ QKAEAPYYDD GSGRMPRYYQ MNAINRTVEA VARGQDRILL VMATGTGKTY TAFQIIWRLW KSGQKKRILF LADRNILVDQ TKNNDFKPFG QAMTKIAKRQ IEKSYEIYLS LYQAVTGNEE EKNVYKQFSR DFFDLVVIDE CHRGSASEDS AWREILDYFS GATHIGLTAT PKETKEVSSI TYFGEPVYSY TLKQGIEDGF LAPYKVVRID FDKDLQGWRP PKGTRDKNGE VIEDRVYDLN DMDRDLVIEA RTQLVARKVT EYLTATDPFQ KTIIFCDDID HAERMRQALV NLNPKRVEEN RKYVMRITGD DKEGKAELDN FINPESRYPV IAATSKLMTT GVDAQTCKLV VLDQHIKSMT EFKQIIGRGT RINEDYGKYW FTIMDFKKAT ELFADPAFDG EPVVIYNPEG DSSPVPPEET EGEEGDVIDG GAGPTEGDET TGGADDDGRK KRVKYVINNV AVHVIAERVQ YYGPDGKLIT ESLRDYTRTC VKKQFASLDD FLRRWSDAEQ KKVIIDELAA QGVMWEALDD EVSAKRGQPL DPFDLICHIA FDQPPLTRKE RAEQVKKRNY FAKYSGAARQ VLEALLDKYA DTGVEHIEDI KILQLAPFSQ IGAPIELVKA FGGKPGYQQA IQELERQLYG
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