Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4584 |
Symbol | |
ID | 5194980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5128618 |
End bp | 5130522 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640589066 |
Product | ATP-dependent metalloprotease FtsH |
Protein accession | YP_001269888 |
Protein GI | 148549786 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0465] ATP-dependent Zn proteases |
TIGRFAM ID | [TIGR01241] ATP-dependent metalloprotease FtsH |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.794949 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAGA ATCTGATCCT GTGGTTGATC ATCGCAGCTG TCCTGGTGAC AGTGATGAAC AACTTCTCCA GCCCTAACGA GCCGCAGACC CTCAACTACT CCGACTTCAT CCAGCAGGTC AAGGATGGCA AAGTCGAGCG TGTGACCGTC GATGGCTACA TCATTACTGG CAAGCGCACC GATGGCGACA ACTTCAAGAC TGTGCGCCCG GCCATCACCG ACAATGGCCT GATCGGCGAT CTGGTCGACA ACCACGTGGT CGTCGAAGGC AAGCAGCCTG AGCAACAGAG CATCTGGACG CAGTTGCTGG TGGCGAGCTT CCCGATCCTG GTGATCATTG CCGTGTTCAT GTTCTTCATG CGCCAGATGC AAGGTGGCGC GGGCGGCAAG GGCGGGCCGA TGAGCTTCGG CAAGAGCAAG GCGCGCCTGC TGTCCGAAGA CCAGGTCAAG ACCACGCTGG CTGACGTTGC GGGCTGCGAC GAGGCCAAGG AAGAGGTTGG CGAGCTGGTC GAGTTCCTGC GCGATCCGGG CAAGTTCCAG CGCCTGGGTG GCCGTATCCC GCGCGGTGTG CTGATGGTCG GCCCACCCGG TACCGGTAAG ACCCTGCTGG CCAAGGCCAT CGCGGGCGAG GCGAAAGTAC CGTTCTTCAC CATTTCCGGT TCGGACTTCG TGGAAATGTT CGTGGGTGTC GGTGCCAGCC GTGTGCGCGA CATGTTCGAG CAGGCCAAGA AGCACGCCCC GTGCATCATC TTCATCGACG AAATCGACGC CGTTGGTCGC CATCGTGGCG CCGGTATGGG CGGCGGTCAC GACGAGCGTG AGCAAACCCT CAACCAGTTG CTGGTGGAGA TGGACGGCTT CGAGATGAAT GATGGCATCA TCGTCATCGC CGCCACCAAC CGTCCGGATG TGCTCGACCC TGCGCTGCTG CGCCCCGGCC GCTTCGACCG TCAGGTGGTG GTTGGCCTGC CGGACATTCG TGGTCGCGAG CAGATCCTCA AGGTGCACAT GCGCAAGGTG CCGATCGGCG AGAACGTCAA CCCGGCGGTC ATCGCGCGGG GTACCCCAGG CTTCTCCGGT GCCGACCTGG CCAACCTGGT CAACGAGGCT TCGCTGTTTG CCGCGCGTTC CAACAAGCGC CTGGTCGAAA TGAAAGAGTT CGAGCTGGCC AAGGACAAGA TCATGATGGG CGCCGAGCGC AAGACCATGG TCATGTCCGA AAAGGAAAAG AGAAACACTG CCTATCACGA GGCCGGCCAC GCCATTGTCG GTCGCCTGGT GCCTGAGCAC GACCCGGTCT ACAAGGTTTC GATCATCCCG CGTGGTCGTG CCTTGGGTGT GACCATGTTC CTGCCGGAAG AAGACCGCTA CAGCCTCTCC AAGCGTGCGC TGATCAGCCA GATCTGCTCG CTGTATGGCG GCCGTATCGC CGAGGAGATG ACCTTGGGCT TCGATGGCGT GACCACTGGC GCGTCCAACG ACATCATGCG CGCCAGCCAG CTCGCTCGTA ACATGGTGAC CAAGTGGGGC CTGTCCGAGA AGCTCGGCCC GCTGATGTAT GCAGAGGAAG AGGGCGAGGT GTTCCTCGGC CGCAGTGCCG GTAGCCAGCA TGCCAGCGTG TCCGGCGAGA CTGCCAAATT GATCGACTCC GAGGTGCGCA GCATCATCGA TCAGTGCTAT GCCACTGCCA AGCAGTTGCT GATCGACAAC CGCGACAAGC TCGAGGCGAT GACCGAAGCG CTGATGAAGT ACGAGACCAT CGATGCCGAT CAGATTGACG ACATCATGGC TGGGCGCACA CCACGTGAGC CGCGTGATTG GGACGATGAC AAGCACTCGG GCACGCCTGC GGCCCAGGAT GAGCGTCCGG AATCGCCAAT CGGCGGCCCA GCGGCTGAAC ACTAA
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Protein sequence | MAKNLILWLI IAAVLVTVMN NFSSPNEPQT LNYSDFIQQV KDGKVERVTV DGYIITGKRT DGDNFKTVRP AITDNGLIGD LVDNHVVVEG KQPEQQSIWT QLLVASFPIL VIIAVFMFFM RQMQGGAGGK GGPMSFGKSK ARLLSEDQVK TTLADVAGCD EAKEEVGELV EFLRDPGKFQ RLGGRIPRGV LMVGPPGTGK TLLAKAIAGE AKVPFFTISG SDFVEMFVGV GASRVRDMFE QAKKHAPCII FIDEIDAVGR HRGAGMGGGH DEREQTLNQL LVEMDGFEMN DGIIVIAATN RPDVLDPALL RPGRFDRQVV VGLPDIRGRE QILKVHMRKV PIGENVNPAV IARGTPGFSG ADLANLVNEA SLFAARSNKR LVEMKEFELA KDKIMMGAER KTMVMSEKEK RNTAYHEAGH AIVGRLVPEH DPVYKVSIIP RGRALGVTMF LPEEDRYSLS KRALISQICS LYGGRIAEEM TLGFDGVTTG ASNDIMRASQ LARNMVTKWG LSEKLGPLMY AEEEGEVFLG RSAGSQHASV SGETAKLIDS EVRSIIDQCY ATAKQLLIDN RDKLEAMTEA LMKYETIDAD QIDDIMAGRT PREPRDWDDD KHSGTPAAQD ERPESPIGGP AAEH
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