| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4578 |
|---|
| Symbol | nusA |
|---|
| ID | 5190590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5122764 |
|---|
| End bp | 5124245 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640589058 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_001269882 |
|---|
| Protein GI | 148549780 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00867288 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG AAGTACTGCT GGTTGTTGAA TCGGTATCCA ACGAAAAAGG TGTACCGCCC
GGCGTCATTT TCGAAGCGCT GGAAGTGGCC CTGGCCACTG CAACCAAAAA ACGTTTTGAA
GACGAAGTCG ACCTACGTGT GGAAATCAAC CGCCACACCG GTAGCTACGA GACTTTCCGT
CGCTGGACCG TGGTCGACGA AGCCGATCTT GATGATCCGG CGATCGAGAC CTGGCTGGAC
AAGATCAAGG ACACCCACCC TGAAGCCAAG GTCGGTGACG TGATCGAAGA GAAGATCGAG
TCCATCGAGT TCGGTCGTAT TGCCGCCCAG ACCGCCAAGC AGGTCATCGT GCAGAAGGTC
CGTGAGGCCG AGCGTGCCCA GGTGGTCGAT GCCTACCGTG AGCGCGTTGG CGAGATCATC
TCCGGTACCG TAAAAAAGGT TACCCGCGAC AACGTCATCG TTGACCTGGG CAACAACGCC
GAGGCCTTGC TGGCTCGCGA AGACATCATT CCGCGCGAAA CCTTCCGTGT TGGCGTGCGC
CTGCGTGCGC TGCTCAAGGA AATTCGCACC GAAAACCGTG GCCCACAGCT GATTCTGTCG
CGCACCGCGC CGCAGATGCT GATCGAGCTT TTCCGCATTG AAGTGCCGGA AATTGCCGAG
GGCCTCATCG AAGTCATGGC TGCTTCCCGT GATCCGGGTT CGCGAGCCAA GATTGCCGTC
CGCTCCAAGG ACAAGCGTAT CGATCCGCAA GGTGCCTGTA TCGGCATGCG TGGTTCGCGC
GTCCAGGCCG TATCCGGGGA GCTGGGTGGT GAGCGTGTGG ATATCGTCCT GTGGGACGAT
AACCCGGCGC AGTTCGTCAT CAACGCCATG TCGCCGGCTG AAGTCGCGGC GATCATCGTT
GATGAAGATG CCCATGCCAT GGACATCGCC GTCGCCGAGG ACAACCTGGC CCAGGCCATT
GGCCGTGGCG GTCAGAACGT TCGCCTGGCC AGTCAGTTGA CCGGCTGGAC CCTGAACGTG
ATGACCGAGA AGGACATCCA GGCCAAGCAA CAGGCCGAAA CCGGTGACAT CCTGCGCAAT
TTCATCGAGG AACTGGAAGT CGACGAGGAG CTGGCCCAAG TGCTGGTCGA CGAAGGCTTC
ACCAGCCTTG AAGAAATTGC CTACGTACCG TTGGAAGAAA TGCTCAACAT CGATGGCTTT
GACGAAGATA TCGTCAATGA GCTCCGCGCT CGAGCCAAGG ACCGTTTGTT GACCAAGGCC
ATCGCTACCG AAGAAAAACT GGCAGACGCC CACCCGGCCG AAGACCTGCT CTCCCTTGAG
GGCATGGACA AAGACCTGGC GGCTGAACTG GCGGTGCGCG GCGTGGTTAA CCGCGAAGAC
CTGGCCGAGC AGTCGATCGA CGATCTGCTC GACATCGACG GCATCGACGA AGAGCGTGCC
GGCAAGTTGA TCATGGCCGC CCGAGCCCAC TGGTTCGAGT AA
|
|---|
| Protein sequence | MSKEVLLVVE SVSNEKGVPP GVIFEALEVA LATATKKRFE DEVDLRVEIN RHTGSYETFR
RWTVVDEADL DDPAIETWLD KIKDTHPEAK VGDVIEEKIE SIEFGRIAAQ TAKQVIVQKV
REAERAQVVD AYRERVGEII SGTVKKVTRD NVIVDLGNNA EALLAREDII PRETFRVGVR
LRALLKEIRT ENRGPQLILS RTAPQMLIEL FRIEVPEIAE GLIEVMAASR DPGSRAKIAV
RSKDKRIDPQ GACIGMRGSR VQAVSGELGG ERVDIVLWDD NPAQFVINAM SPAEVAAIIV
DEDAHAMDIA VAEDNLAQAI GRGGQNVRLA SQLTGWTLNV MTEKDIQAKQ QAETGDILRN
FIEELEVDEE LAQVLVDEGF TSLEEIAYVP LEEMLNIDGF DEDIVNELRA RAKDRLLTKA
IATEEKLADA HPAEDLLSLE GMDKDLAAEL AVRGVVNRED LAEQSIDDLL DIDGIDEERA
GKLIMAARAH WFE
|
|---|
| |