Gene Pput_4536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4536 
Symbol 
ID5194496 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp5061665 
End bp5063740 
Gene Length2076 bp 
Protein Length691 aa 
Translation table11 
GC content66% 
IMG OID640589011 
Productexodeoxyribonuclease V, alpha subunit 
Protein accessionYP_001269840 
Protein GI148549738 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01447] exodeoxyribonuclease V, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.636293 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.640936 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCGAA GCCTTGTCGA CCTGTTGCCC ACCCCGTTGC ACGCAGAGCA CCTGCTGGCG 
CTGGCACCGC AGCACAACAG CGCTGATTTG CTGCAATTAC TCGACCGCTG GGTTGAGCGG
GGCTGGCTAC GTGCCCTGGA CCGCGCGTTC GTGTCGTTCC TGGAAGAGCG TGCCCCCGGC
AGTGATCCCT TACTATTGCT GGCAGCGGCG CTGGCCAGCC ACCAACTGGG GCACGGACAT
GTCTGCCTCG ACCTGCAACA AACCTTGGCC GAGCCGGATT TCGCCCTGTC GTTGCCGCCG
GAAGGTGACG CCCTTATCGG CCCTTTGCTA CTGCCATCGC AACTGCTGGC CAACCTTGAC
TTGAATGCCT GGCTTCAGCG CATCATCGCC AGCCCGCTGG TGGCCGCAGG TGATACGCCT
GGCCAGCAGG CGCGGCCACT GGTACGCAGT GGCGAGCGCC TTTACCTGCG CCGTTACTGG
CGTTACGAGC GGCGCATTGA CCATGCCCTG CGCCAGCGCC TGAGTCAGGC CGAAGCACCG
CCTGCGGACC TGCCAGAGCG CCTGGCGCAA CTGTTCGAGG GCGGCGCGCC AGCTGGCCAG
GTGGACTGGC AGAAGCTTGC CTGCGCCTTG GCCACCCGGG CCGGTTTCAG CATCATCACG
GGTGGCCCCG GCACCGGCAA GACGACCACC GTGGTGCGCC TGCTGGCGTT GCTGCAGGCG
CCGGCAGTGG AGCAGGGTAG GCCACTGCGC ATCCGCCTGG CTGCACCGAC CGGCAAGGCC
GCTGCGCGCC TGACCGAATC CATTGGCCAG CAAGTCGAGC GCCTGCAAGT CAGCGCCGAA
GTACGCGGGC AAATCCCCAC TGAAGTCAGC ACCGTGCATC GTCTGCTCGG AAGCCGCCCG
GGCTCGCGGC ACTTCCGCCA CCACGCTGGC AACCCGTTGC CGTTGGATGT GCTGGTGGTC
GATGAGGCGT CGATGATCGA CCTGGAAATG ATGGCCAACC TGCTCGATGC CTTGCCGCCG
CGGGCGCGTC TGGTGCTGCT GGGCGACAAG GACCAGTTGG CCTCGGTCGA GGCCGGCGCG
GTACTGGGTG ACCTGTGCCG GGATGCTGAG GAGGGCTTTT ACTCGCCGGC GACTGCAGCG
TGGCTTCAGC AGGTCAGTGG CGAGTCGCTG GCCGGCAGTG GCCTCAAGGC CGGCGATGAG
CAGCGCCACC CGTTGGCTCA GCAAGTGGTG ATGCTGCGGT TTTCACGGCG TTTCGGTGAA
GGCAGCGGTA TTGGCCAGTT GGCCAGACTG GTCAATCGTC AGGATGCTCA CGCGGCGCGC
AACCTGCTGG CCGCGCCGCC TGCTGACGTG CACAGCCTGT CGCTCAAGCA CGAGCAGGAT
CGTGCTTTTG ACCGCCTGTT ACTGGACGGT CTGAACCGCG GTACCGATGG ACCGCACGGC
TACCGCAGCT ACCTGCGCAC CCTTGGGCGT TACCGGCCAG CACTTGATAC CGCCTTTGAC
GACCCCGCCT GGGAGCAATG GGCGGGCAAG GTGTTGCGCA GTTTCGAGGA TTTCCAGTTG
CTGTGCGCGG TGCGCCGGGG CGCCTGGGGG GTCGAAGGCC TGAATGAACG GGTGGCGCGG
GTGCTGCACA ATGCCGGTCT GATCGACAGC CAGCAACCTT GGTACGAAGG GCGCCCGGTG
CTGGTGACCC GCAACGACTA CGGTCTGGGC CTGATGAATG GTGACATCGG TATAGCCCTG
CGCTTGCCGG ATGAGCAGGG CCAGCCGCTG CTGCGTGTGG CCTTCCCGCG CAACGACGGC
AGTGGTGGTG TGCGGTTCGT TCTGCCGAGC CGGCTCAACG AAGTGGAAAC GGTATTCGCC
ATGACCGTGC ACAAGTCCCA GGGCTCGGAG TTCAGCCACA CTGCCCTGGT GCTGCCGGAT
GCGCTCAACC CGGTGCTGAC CAAGGAACTG GTGTACACCG GCATCACTCG GGCCAAGCAC
TGCTTCAGCC TGGTCGAGCC ACGCCAAGGC ATTTTCGAAG AAGCGGTGGC GCGCAAAGTA
CGGCGTATTT CCGGGTTGAT GCTCGAGCAG GTCTAG
 
Protein sequence
MSRSLVDLLP TPLHAEHLLA LAPQHNSADL LQLLDRWVER GWLRALDRAF VSFLEERAPG 
SDPLLLLAAA LASHQLGHGH VCLDLQQTLA EPDFALSLPP EGDALIGPLL LPSQLLANLD
LNAWLQRIIA SPLVAAGDTP GQQARPLVRS GERLYLRRYW RYERRIDHAL RQRLSQAEAP
PADLPERLAQ LFEGGAPAGQ VDWQKLACAL ATRAGFSIIT GGPGTGKTTT VVRLLALLQA
PAVEQGRPLR IRLAAPTGKA AARLTESIGQ QVERLQVSAE VRGQIPTEVS TVHRLLGSRP
GSRHFRHHAG NPLPLDVLVV DEASMIDLEM MANLLDALPP RARLVLLGDK DQLASVEAGA
VLGDLCRDAE EGFYSPATAA WLQQVSGESL AGSGLKAGDE QRHPLAQQVV MLRFSRRFGE
GSGIGQLARL VNRQDAHAAR NLLAAPPADV HSLSLKHEQD RAFDRLLLDG LNRGTDGPHG
YRSYLRTLGR YRPALDTAFD DPAWEQWAGK VLRSFEDFQL LCAVRRGAWG VEGLNERVAR
VLHNAGLIDS QQPWYEGRPV LVTRNDYGLG LMNGDIGIAL RLPDEQGQPL LRVAFPRNDG
SGGVRFVLPS RLNEVETVFA MTVHKSQGSE FSHTALVLPD ALNPVLTKEL VYTGITRAKH
CFSLVEPRQG IFEEAVARKV RRISGLMLEQ V