Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4536 |
Symbol | |
ID | 5194496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5061665 |
End bp | 5063740 |
Gene Length | 2076 bp |
Protein Length | 691 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640589011 |
Product | exodeoxyribonuclease V, alpha subunit |
Protein accession | YP_001269840 |
Protein GI | 148549738 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.636293 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.640936 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCGAA GCCTTGTCGA CCTGTTGCCC ACCCCGTTGC ACGCAGAGCA CCTGCTGGCG CTGGCACCGC AGCACAACAG CGCTGATTTG CTGCAATTAC TCGACCGCTG GGTTGAGCGG GGCTGGCTAC GTGCCCTGGA CCGCGCGTTC GTGTCGTTCC TGGAAGAGCG TGCCCCCGGC AGTGATCCCT TACTATTGCT GGCAGCGGCG CTGGCCAGCC ACCAACTGGG GCACGGACAT GTCTGCCTCG ACCTGCAACA AACCTTGGCC GAGCCGGATT TCGCCCTGTC GTTGCCGCCG GAAGGTGACG CCCTTATCGG CCCTTTGCTA CTGCCATCGC AACTGCTGGC CAACCTTGAC TTGAATGCCT GGCTTCAGCG CATCATCGCC AGCCCGCTGG TGGCCGCAGG TGATACGCCT GGCCAGCAGG CGCGGCCACT GGTACGCAGT GGCGAGCGCC TTTACCTGCG CCGTTACTGG CGTTACGAGC GGCGCATTGA CCATGCCCTG CGCCAGCGCC TGAGTCAGGC CGAAGCACCG CCTGCGGACC TGCCAGAGCG CCTGGCGCAA CTGTTCGAGG GCGGCGCGCC AGCTGGCCAG GTGGACTGGC AGAAGCTTGC CTGCGCCTTG GCCACCCGGG CCGGTTTCAG CATCATCACG GGTGGCCCCG GCACCGGCAA GACGACCACC GTGGTGCGCC TGCTGGCGTT GCTGCAGGCG CCGGCAGTGG AGCAGGGTAG GCCACTGCGC ATCCGCCTGG CTGCACCGAC CGGCAAGGCC GCTGCGCGCC TGACCGAATC CATTGGCCAG CAAGTCGAGC GCCTGCAAGT CAGCGCCGAA GTACGCGGGC AAATCCCCAC TGAAGTCAGC ACCGTGCATC GTCTGCTCGG AAGCCGCCCG GGCTCGCGGC ACTTCCGCCA CCACGCTGGC AACCCGTTGC CGTTGGATGT GCTGGTGGTC GATGAGGCGT CGATGATCGA CCTGGAAATG ATGGCCAACC TGCTCGATGC CTTGCCGCCG CGGGCGCGTC TGGTGCTGCT GGGCGACAAG GACCAGTTGG CCTCGGTCGA GGCCGGCGCG GTACTGGGTG ACCTGTGCCG GGATGCTGAG GAGGGCTTTT ACTCGCCGGC GACTGCAGCG TGGCTTCAGC AGGTCAGTGG CGAGTCGCTG GCCGGCAGTG GCCTCAAGGC CGGCGATGAG CAGCGCCACC CGTTGGCTCA GCAAGTGGTG ATGCTGCGGT TTTCACGGCG TTTCGGTGAA GGCAGCGGTA TTGGCCAGTT GGCCAGACTG GTCAATCGTC AGGATGCTCA CGCGGCGCGC AACCTGCTGG CCGCGCCGCC TGCTGACGTG CACAGCCTGT CGCTCAAGCA CGAGCAGGAT CGTGCTTTTG ACCGCCTGTT ACTGGACGGT CTGAACCGCG GTACCGATGG ACCGCACGGC TACCGCAGCT ACCTGCGCAC CCTTGGGCGT TACCGGCCAG CACTTGATAC CGCCTTTGAC GACCCCGCCT GGGAGCAATG GGCGGGCAAG GTGTTGCGCA GTTTCGAGGA TTTCCAGTTG CTGTGCGCGG TGCGCCGGGG CGCCTGGGGG GTCGAAGGCC TGAATGAACG GGTGGCGCGG GTGCTGCACA ATGCCGGTCT GATCGACAGC CAGCAACCTT GGTACGAAGG GCGCCCGGTG CTGGTGACCC GCAACGACTA CGGTCTGGGC CTGATGAATG GTGACATCGG TATAGCCCTG CGCTTGCCGG ATGAGCAGGG CCAGCCGCTG CTGCGTGTGG CCTTCCCGCG CAACGACGGC AGTGGTGGTG TGCGGTTCGT TCTGCCGAGC CGGCTCAACG AAGTGGAAAC GGTATTCGCC ATGACCGTGC ACAAGTCCCA GGGCTCGGAG TTCAGCCACA CTGCCCTGGT GCTGCCGGAT GCGCTCAACC CGGTGCTGAC CAAGGAACTG GTGTACACCG GCATCACTCG GGCCAAGCAC TGCTTCAGCC TGGTCGAGCC ACGCCAAGGC ATTTTCGAAG AAGCGGTGGC GCGCAAAGTA CGGCGTATTT CCGGGTTGAT GCTCGAGCAG GTCTAG
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Protein sequence | MSRSLVDLLP TPLHAEHLLA LAPQHNSADL LQLLDRWVER GWLRALDRAF VSFLEERAPG SDPLLLLAAA LASHQLGHGH VCLDLQQTLA EPDFALSLPP EGDALIGPLL LPSQLLANLD LNAWLQRIIA SPLVAAGDTP GQQARPLVRS GERLYLRRYW RYERRIDHAL RQRLSQAEAP PADLPERLAQ LFEGGAPAGQ VDWQKLACAL ATRAGFSIIT GGPGTGKTTT VVRLLALLQA PAVEQGRPLR IRLAAPTGKA AARLTESIGQ QVERLQVSAE VRGQIPTEVS TVHRLLGSRP GSRHFRHHAG NPLPLDVLVV DEASMIDLEM MANLLDALPP RARLVLLGDK DQLASVEAGA VLGDLCRDAE EGFYSPATAA WLQQVSGESL AGSGLKAGDE QRHPLAQQVV MLRFSRRFGE GSGIGQLARL VNRQDAHAAR NLLAAPPADV HSLSLKHEQD RAFDRLLLDG LNRGTDGPHG YRSYLRTLGR YRPALDTAFD DPAWEQWAGK VLRSFEDFQL LCAVRRGAWG VEGLNERVAR VLHNAGLIDS QQPWYEGRPV LVTRNDYGLG LMNGDIGIAL RLPDEQGQPL LRVAFPRNDG SGGVRFVLPS RLNEVETVFA MTVHKSQGSE FSHTALVLPD ALNPVLTKEL VYTGITRAKH CFSLVEPRQG IFEEAVARKV RRISGLMLEQ V
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