| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4460 |
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| Symbol | |
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| ID | 5190560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4985836 |
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| End bp | 4987365 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640588935 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001269764 |
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| Protein GI | 148549662 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGCGTC GCATCATCAG AACGCTCAAG GCGTTCAGTG CCTGTGCCCT TGCCCTCACC
TTGAGCGGCT GTATCGGAAC CTGGGGCATT GCCCCGCAAA GCAAGACGCT GCAAGCCAAT
ACCTTGACCA CCGACGCGGC CATTCGCGAA GCCGCGACCG ACGCTCACTG GCCCGACCAG
CAGTGGTGGC ACGCCTATGG TGACCCACAG CTGGACCGCT GGGTTACCCT GGCCGTGGCC
GGTAGCCCAA GCCTGGCCAT GGCCGCAGCG CGGGTGCGCG AAGCCAAGGC CATGGCCGGT
GTGGTCGAGT CGGCGGAAAA GCTCCAGGCC AACGGCCAGG CCACGCTCAA GCGCCACAAC
TGGCCTGAAG ACCAGTTTTA TGGCCCCGGC GCGTTGTCGG GTGCCAACAC CTGGGACAAC
AACGCCGCCA TCGGTTTCAG CTACGCCCTT GACCTGTGGG GGCGCGAGCG CAATGCCAGC
GAGCAGGCCG TGGACCAGGC GCACATGAGC GTGGCCGAAG CCCGTCAGGC GCAGCTGGAA
CTGCAGAACA ATGTGGTGCG TGCCTACATC CAGCTGAGCC TGCATTTTGC CCAGCGCGAT
ATCGTCAAGG CCGAACTGGA ACAGCAGGAG CAGATCCTGG CCCTGGCCAA GCGTCGCCTG
GATGCCGGTA TCGGCACCCA TTTCGAAGTC AGCCAGGCCG AAGCGCCGCT GCCGGAAACC
CACCGCCAGC TCGACAGCCT CGACGAAGAA ATTGCCCTGA CCCGCAACCA GCTGGCCGCA
CTGGCCGGCA AGGGGCCGGG GGAAGGCGCG CAGTTGCAGC GCCCGGTCTT GGCCTTGGCC
GCGCCGCTGA AACTGCCTTC GAACCTGCCC GCCGAACTGG TTGGCCAGCG GCCTGATGTG
GTTGCCAGCC GCTGGCAGGT GGCTGCCCAG GCGCGTGGCA TCGACGTCGC TCACGCCGGC
TTCTTCCCCA ACGTCGACCT GGTCGGCAGC CTGGGCTTCA TGGCCACCGG CGGTGGCCCG
CTGGAATTCC TGACCGGGCG CAAGTTCAAC TACAACGTCG GCCCGGCCAT CAGCTTGCCG
ATCTTTGACG GTGGGCGCCT GCGCTCAGAA CTGGGCGTGG CCTCGGCGGG GTATGACGTG
GCGGTGGCCC GCTACAACCA GACCGTGGTT GGTGCACTGA AGAACATCTC CGACCAGTTG
ATCCGCCGCG AGTCGATGAA AGAACAGTCG CACTTCGCCG CCGAATCGGT TGCTGCCGCG
CAGAAAACCT ACGACATCGC CATGGTCGCG TTCCAGCGCG GCCTTACCGA CTACCTGAAC
GTGCTCAACG CGCAGACTTT GCTGTTCCGC CAGCAGCAGG TGCAGCAGCA GGTGCAGGCC
GCCCGCCTGA TTGCCCATGC CGAGCTGGTC ACCGCCCTGG GTGGTGGCCT GCAGGCCGGT
CAGGATGCGC CGAAAGAGGA ACGCCAGGCA GCACCGAAGA CCCCGGCCAC CCTGGCCATT
TTCGACAAGA AGCCGGATAA CGCCGAATGA
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| Protein sequence | MPRRIIRTLK AFSACALALT LSGCIGTWGI APQSKTLQAN TLTTDAAIRE AATDAHWPDQ
QWWHAYGDPQ LDRWVTLAVA GSPSLAMAAA RVREAKAMAG VVESAEKLQA NGQATLKRHN
WPEDQFYGPG ALSGANTWDN NAAIGFSYAL DLWGRERNAS EQAVDQAHMS VAEARQAQLE
LQNNVVRAYI QLSLHFAQRD IVKAELEQQE QILALAKRRL DAGIGTHFEV SQAEAPLPET
HRQLDSLDEE IALTRNQLAA LAGKGPGEGA QLQRPVLALA APLKLPSNLP AELVGQRPDV
VASRWQVAAQ ARGIDVAHAG FFPNVDLVGS LGFMATGGGP LEFLTGRKFN YNVGPAISLP
IFDGGRLRSE LGVASAGYDV AVARYNQTVV GALKNISDQL IRRESMKEQS HFAAESVAAA
QKTYDIAMVA FQRGLTDYLN VLNAQTLLFR QQQVQQQVQA ARLIAHAELV TALGGGLQAG
QDAPKEERQA APKTPATLAI FDKKPDNAE
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