Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4457 |
Symbol | |
ID | 5192448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4982601 |
End bp | 4983461 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640588932 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001269761 |
Protein GI | 148549659 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGT TCTTCAGCCT GATCGCCACC CTGCTGGTGC TGGTCGCTGC CGTGGCCATC GGTCGCCAGT TGTGGCTGCA CTACATGACC ACGCCATGGA CCCGTGATGG CCGTGTGCGT GCCGACATCA TCAACGTCGC TGCCGACGTG CCCGGCTACG TGGTGGATGT ACCGGTCAAG GACAACCAGC GGGTGAAGAA GGGCGACCTG CTGATCCAGA TCGACCCTGA GCACTACCAG TTGGCCGTCG ACCAGGCCAA GGCACTGGTC GCCTCGCGCA AGGCCACCTG GGAAATGCGC AAGGTCAATG CCAAGCGCCG TGCCGACATG GACAACCTGG TGATCTCCAA GGAAAACCGC GACGACGCCA GCAACATCGC CAATTCCGCC CAGGCTGACT ACCAGCAGGC CCTGGCCGAA CTGGCTGCTG CCGAACTGAA CCTCAAGCGC ACCCACATCG TGGCTACGGT GGACGGCTAC GTGACCAACC TGAATATCCA CAAGGGCGAC TATGCGCGTA CCGGCGAAGC AGTGATGGCG GTGGTCGACG AGAATTCGTT CTGGGTTTAC GGGTTCTTCG AGGAGACCAA GCTGCCGCAT GTGAAGGTGG GGGACCAGGC CGAATTGCAG ATGATGAGCG GCGAGCGCCT CAAGGGGCAT GTGGAGAGCA TTGCCCGCGG CATCTACGAC CGTGACAACC CACAGAGCCG CGAGCTGATC GCCGACGTGA ATCCGACCTT CAACTGGGTG CGGCTGGCAC AGCGGGTGCC GGTGCGCATT CACATCGATG AAGTGCCGGA AGGGTTTTTG CTGGCGGCGG GGACGACTTG TACGGTGGTG GTGAAGCCGA GTTCGCCTTG A
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Protein sequence | MKKFFSLIAT LLVLVAAVAI GRQLWLHYMT TPWTRDGRVR ADIINVAADV PGYVVDVPVK DNQRVKKGDL LIQIDPEHYQ LAVDQAKALV ASRKATWEMR KVNAKRRADM DNLVISKENR DDASNIANSA QADYQQALAE LAAAELNLKR THIVATVDGY VTNLNIHKGD YARTGEAVMA VVDENSFWVY GFFEETKLPH VKVGDQAELQ MMSGERLKGH VESIARGIYD RDNPQSRELI ADVNPTFNWV RLAQRVPVRI HIDEVPEGFL LAAGTTCTVV VKPSSP
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