| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4428 |
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| Symbol | |
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| ID | 5191119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4948240 |
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| End bp | 4949268 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588903 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001269732 |
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| Protein GI | 148549630 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.78571 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATGT TGAAAACCAC CCTGGCAGTC CTGACCGCTG CCGCCGCGCT GGGCGCCGTG
AGCACTGCCC AGGCCGGCGC CACCCTCGAT GCGGTAAAGA AGAAGGGCTT CGTCCAGTGT
GGCGTGAGCG ACGGTCTTCC AGGCTTCTCG GTACCTGATG CGCAGGGCAA GATCGTCGGC
ATCGATGCCG ATGTCTGCCG CGCCGTGGCC GCCGCCGTGT TCAGGGATGC CACCAAGGTC
AAGTTCAGCC AGCTCAACGC CAAGGAACGC TTCACTGCCC TGCAGTCGGG CGAGGTCGAC
GTGCTGTCGC GCAACACCAC CTGGACCAGC TCGCGCGATG CCGGCATGGG CCTGGTGTTC
GCGGGTGTCA CCTACTATGA CGGCGTCGGC TTCCTGGTCA ACAAGAAGCT TGGCGTTTCC
AGCGCCAAAG AGCTCGATGG CGCGACCATC TGCATCCAGG CCGGCACCAC CACCGAGCTG
AACGTGTCGG ACTTCTTCCG TGCCAATGGC CTGAAGTACA CCCCGATTAC CTTCGACACC
TCTGACGAGA GCGCCAAATC GCTGGAGTCT GGCCGTTGCG ACGTGCTGAC TTCGGACAAA
TCGCAGCTGT TCGCCCAGCG CTCCAAGCTG GCTGCGCCGA CCGACTACGT GGTGTTGCCG
GAAACCATCT CCAAGGAGCC ACTGGGCCCG GTAGTGCGTA AAGGCGATGA GGAGTGGTTC
AGCATCGTCA AGTGGACCCT GTTCGCCATG CTCAATGCCG AAGAGGCGGG CATCACTTCC
AAGAACGTCG AGGCAGAGGC CAAGGCCACC AAGAACCCGG ATGTCGCCCG ACTGCTGGGT
GCGGATGGCG AGTATGGCAA GGACCTCAAG CTGCCCAAAG ACTGGGTAGT GCAGATCGTC
AAGCAAGTGG GTAACTATGG CGAAGTGTTC GAGAAGAACC TGGGCCAGAG CACTGACTTG
AAGATCGACC GTGGCATGAA CGCCCTGTGG AACAACGGCG GCATCCAGTA CGCGCCTCCC
GTGCGCTGA
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| Protein sequence | MKMLKTTLAV LTAAAALGAV STAQAGATLD AVKKKGFVQC GVSDGLPGFS VPDAQGKIVG
IDADVCRAVA AAVFRDATKV KFSQLNAKER FTALQSGEVD VLSRNTTWTS SRDAGMGLVF
AGVTYYDGVG FLVNKKLGVS SAKELDGATI CIQAGTTTEL NVSDFFRANG LKYTPITFDT
SDESAKSLES GRCDVLTSDK SQLFAQRSKL AAPTDYVVLP ETISKEPLGP VVRKGDEEWF
SIVKWTLFAM LNAEEAGITS KNVEAEAKAT KNPDVARLLG ADGEYGKDLK LPKDWVVQIV
KQVGNYGEVF EKNLGQSTDL KIDRGMNALW NNGGIQYAPP VR
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