| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4427 |
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| Symbol | |
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| ID | 5190547 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4946994 |
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| End bp | 4948172 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640588902 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_001269731 |
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| Protein GI | 148549629 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4597] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.22021 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAATC AAATCGGCGC ACCCAAGGGC TTGTCCCTTA ACGATCCGCG TGTGCGCGCG
TGGTTGTTCC AGGTCCTCAC GATCGTCTTC GTGGTCGGCC TGGGCTGGTA CCTGTTTCAC
AACACGCAAA CCAACCTGCA ACACCGGGGC ATTACCTCGG GCTTCGACTT CCTCGACCGC
AGTGCCGGCT TCGGTATCGC CCAGCACCTG ATCCCCTATG TGGAATCCGA CAGTTATGCG
CGGGTGTTCG TCATCGGCCT GCTCAATACG CTGTTGGTGA CCTTCATCGG CGTCATCCTG
GCAACGATTC TGGGCTTCAT CATTGGTGTA GCGCGCCTGT CACCGAACTG GATGATCAGC
AAACTGGCAA CCGTGTATGT GGAAACCTTC CGCAACATTC CGCCGTTGCT GCAGATCCTG
TTCTGGTACT TCGCCGTGTT CCTGACCCTG CCGGGACCAC GGGGCAGCAT CAACATCGAT
GACATGTTCT TCATCAGCAA CCGCGGCCTG AACATGCCGG GTGCGTCGAT GGCCGACGGT
TTCTGGCCAT TCGTGGTGGC CCTGGCAGTA GCGATTGTCG CGATCGTGCT GATGGTGCGC
TTCGCCAACA AGCGCTTCGA CGAGACCGGC GTGCCATTCC ACAAGTTCTG GGTGGGCCTG
GCGCTGTTCA TCGCCATCCC AGGGCTGAGC GTGTTGCTGT TCGGCAGCCC GGTCAGCTGG
GAGGTGCCGC AGCTCAAAGG CTTCAACTTT GTCGGTGGCT GGGTGCTGAT CCCCGAGTTG
CTGGCGCTGA CCCTGGCGCT GACTATCTAT ACGGCAGCCT TCATCGCCGA GATCGTGCGC
TCCGGTATCC GTTCGGTCAG TCATGGCCAG ACCGAAGCGG CGCGCTCGCT GGGCCTGCGC
GAGGGCCCGA CCCTGCGCAA GGTGATCATT CCCCAGGCAC TGCGGGTGAT CATTCCGCCG
CTGACCAGCC AATACCTCAA CCTGGCGAAG AACTCTTCGC TGGCGGCCGG TATCGGCTAC
CCGGAGATGG TCTCGCTGTT CGCCGGCACC GTGCTCAATC AGACCGGCCA GGCCATCGAG
GTGATCGCCA TCACCATGAG TGTCTATCTC GCCATCAGCA TCAGCATTTC GCTGCTGATG
AACTGGTACA ACAAGCGCAT TGCGCTGATC GAGCGGTGA
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| Protein sequence | MQNQIGAPKG LSLNDPRVRA WLFQVLTIVF VVGLGWYLFH NTQTNLQHRG ITSGFDFLDR
SAGFGIAQHL IPYVESDSYA RVFVIGLLNT LLVTFIGVIL ATILGFIIGV ARLSPNWMIS
KLATVYVETF RNIPPLLQIL FWYFAVFLTL PGPRGSINID DMFFISNRGL NMPGASMADG
FWPFVVALAV AIVAIVLMVR FANKRFDETG VPFHKFWVGL ALFIAIPGLS VLLFGSPVSW
EVPQLKGFNF VGGWVLIPEL LALTLALTIY TAAFIAEIVR SGIRSVSHGQ TEAARSLGLR
EGPTLRKVII PQALRVIIPP LTSQYLNLAK NSSLAAGIGY PEMVSLFAGT VLNQTGQAIE
VIAITMSVYL AISISISLLM NWYNKRIALI ER
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