| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4416 |
|---|
| Symbol | |
|---|
| ID | 5190725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4935307 |
|---|
| End bp | 4936503 |
|---|
| Gene Length | 1197 bp |
|---|
| Protein Length | 398 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640588893 |
|---|
| Product | methionine gamma-lyase |
|---|
| Protein accession | YP_001269722 |
|---|
| Protein GI | 148549620 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0626] Cystathionine beta-lyases/cystathionine gamma-synthases |
|---|
| TIGRFAM ID | [TIGR01328] methionine gamma-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.510937 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGACT CCCACCACAA CACCGGTTTT TCCACGCGGG CCATTCATCA TGGCTATGAC
CCGCTTTCCC ATGGTGGCGC CCTGGTGCCA CCGGTGTATC AAACGGCTAC CTATGCCTTT
CCCACTGTCG AGTACGGTGC TGCCTGCTTC GCCGGGGAGG AGCCTGGGCA TTTCTACAGC
CGCATTTCCA ACCCCACGCT GGCCTTGCTG GAGCAGCGCA TGGCTTCGCT GGAGGGCGGT
GAAGCGGGGT TGGCGTTGGC CTCGGGGATG GGCGCGATTA CCTCAACCCT CTGGACCCTG
CTAAGGCCTG GCGATGAGCT GATTGTCGGG CGCACCTTGT ATGGCTGTAC CTTCGCTTTT
CTGCACCACG GTATTGGTGA GTTCGGGGTG AAAGTTCGCC ATGTCGATCT CAACGATGCC
AAGGCCCTGA AAGCGGCGAT CAGCAGTAAA ACACGGATGA TCTACTTCGA AACACCGGCC
AACCCCAACA TGCAACTTGT GGATATTGCG GCGGTTGTGG AGGCGGTGCG GGGGCATGAT
GTGCATGTGG TGGTCGATAA CACCTACTGT ACGCCGTACC TGCAGCGGCC ACTGGAGCTG
GGGGCGGACC TGGTGGTGCA CTCGGCAACC AAGTACCTCA GTGGGCATGG CGATATCACT
GCCGGGTTGG TGGTGGGGTG CAAGGCGTTG GTAGACCGTA TCCGCCTGGA AGGGCTGAAG
GATATGACCG GCGCGGTGCT GTCACCGCAT GACGCGGCGT TGCTGATGCG CGGTATCAAG
ACCCTGGCCC TGCGCATCGA CCGGCATTGC GCCAATGCCC AGCAGGTGGC CGAGTTTCTC
GCTCGGCAGC CGCAGGTGGA ATTGATTCAT TACCCGGGGC TACCGTCTTT TGCCCAGTAC
GCGTTGGCCC AGCGACAGAT GCGTTTGCCT GGCGGGATGA TTGCGTTTGA GCTCAAGGGT
GGCATTGAGG CGGGGCGGCG CTTCATGAAT GCGCTGCAGC TCTTTGCCCG GGCGGTGAGC
CTGGGGGATG CCGAGTCGCT GGCGCAGCAT CCGGCGAGCA TGACGCATTC CAGCTATACG
CCGCAGGAGC GGGCGCATCA CGGGATATCG GAGGGGTTGG TGCGTCTGTC GGTGGGGCTG
GAGGATGTGG AGGACCTGCT GGCAGATGTC GAACAGGCAT TGCAGGCCTG CTGTTAG
|
|---|
| Protein sequence | MRDSHHNTGF STRAIHHGYD PLSHGGALVP PVYQTATYAF PTVEYGAACF AGEEPGHFYS
RISNPTLALL EQRMASLEGG EAGLALASGM GAITSTLWTL LRPGDELIVG RTLYGCTFAF
LHHGIGEFGV KVRHVDLNDA KALKAAISSK TRMIYFETPA NPNMQLVDIA AVVEAVRGHD
VHVVVDNTYC TPYLQRPLEL GADLVVHSAT KYLSGHGDIT AGLVVGCKAL VDRIRLEGLK
DMTGAVLSPH DAALLMRGIK TLALRIDRHC ANAQQVAEFL ARQPQVELIH YPGLPSFAQY
ALAQRQMRLP GGMIAFELKG GIEAGRRFMN ALQLFARAVS LGDAESLAQH PASMTHSSYT
PQERAHHGIS EGLVRLSVGL EDVEDLLADV EQALQACC
|
|---|
| |