Gene Pput_4409 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4409 
SymbolrplM 
ID5191668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4928309 
End bp4928737 
Gene Length429 bp 
Protein Length142 aa 
Translation table11 
GC content54% 
IMG OID640588886 
Product50S ribosomal protein L13 
Protein accessionYP_001269715 
Protein GI148549613 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0102] Ribosomal protein L13 
TIGRFAM ID[TIGR01066] ribosomal protein L13, bacterial type 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.867094 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.414733 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACTT TTACTGCTAA ACCGGAAACA GTAAAGCGCG AGTGGTTCGT AGTCGACGCC 
GCTGGCCAGA CCCTGGGTCG TCTGGCTACC GAAATCGCTA CCCGTCTGCG TGGCAAACAC
AAACCAGAAT ACACCCCTCA CGTTGACACC GGCGACTACA TCGTCGTTAT CAACGCCGAG
CAGGTTCGTG TGACTGGTGC CAAGTCTTCC GACAAAATGT ACTACTCCCA CTCCGGTTTC
CCAGGCGGTA TCAAGGAAAT CAACTTCGAG AAGTTGATCG CCAAGGCCCC TGAGCGTGTT
ATCGAAACTG CGGTCAAAGG CATGCTGCCT AAGAACCCGC TGGGTCGCGA CATGTACCGC
AAGCTGAAAG TGTACGCGGG TGCTGCTCAC CCACACACTG CTCAGCAGCC TCAAGAACTG
AAGATCTAA
 
Protein sequence
MKTFTAKPET VKREWFVVDA AGQTLGRLAT EIATRLRGKH KPEYTPHVDT GDYIVVINAE 
QVRVTGAKSS DKMYYSHSGF PGGIKEINFE KLIAKAPERV IETAVKGMLP KNPLGRDMYR
KLKVYAGAAH PHTAQQPQEL KI