| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4399 |
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| Symbol | |
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| ID | 5194848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4920371 |
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| End bp | 4922188 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640588876 |
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| Product | LppC family lipoprotein |
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| Protein accession | YP_001269705 |
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| Protein GI | 148549603 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3107] Putative lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.204458 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGCTT GCCTGCGGCT GCTCACAGCC CTCTGCCTCG CCGCCCTGCT GGCAGCCTGC
GCCAGCTCGC CCTCATCCAG CCTGGGCGAA CTGCCACGCA CCCCGGATGC CAGCATCGAG
CAACTGCTCG AAAAGGCCGC TTCCAGCAAG TCTGCAGAAG ACGCCGCCCT GCTGCGCCTG
AGCGCGGCCG ACCTGGCCTA CAAGCAGAAG GACTTCCCAC GCGCCGCACG CATTCTCGAG
CAGGTCCCGC TGGACACGCT CAAGCCGGCC CAGCAAGTGT TCGCCAGCAC CCTCGCGGCG
GAACTGGCCA TGAGCCGCAA CCAGCCCAAA GCAGCGCTGA CCGCCCTGGC CCACCCGAGC
CTGCAGCGCC TTGCCGAGCT GCCGACAGAA CAGCAAGTGC GCACCTACAG CGTGCACGCC
GCCGCGCTCG AAGCCGACGG CCAGGCCCTG GCTGCCGCAC AGCAGCGCAC TCTACTGGCC
CCGCTGCTTG GCGGCCAGGC CGCCAGCACC AACAATGACG CCATCTGGGC CTTGGTTGCA
TCGCTTCCGG CAGAGCAACT GCAGCAGCCA ACCAACGATC AGACCCTGGC TGGCTGGACC
AGCCTGGCCT TCGCCGTGAA AAGCGCTGGC ACCCTGGAGC AGCAGCAAGC GGCCATCGAA
GCCTGGGTCA AACAGCACCC GGACCACCCT GCCGCCCAGC AACTGCCGCT GGCCCTGACC
AAACTCAAGG AACTGGCCAG CCAGCCGCTG ACCAAGATCG CCCTGCTGCT GCCTCAGGAA
GGCCCGCTGG CCGGTGTAGC CCGCGCCCTG CGCGATGGCT TCATGGCCGC CCACTTCCAG
GCCCAGCAAA GCGGCCAGCC AGCGCCTGCG GTGCAGGTGT TCGACAGCTC GCGTATCGGC
TCGCTGGACG ACTTCTATCG CCAGGCGCAA GCCGCCGGCG TGCAACTGGT CATCGGCCCG
CTTGAAAAAC CATTGGTCAA ACAACTGGCC GCCAAACCAC AGCTGCCGAT CACCACGCTG
GCCCTGAACT ACGCCGACGC TGGCCAGAAG GCGCCGCCAC AACTGTTCCA GTTCGGTCTG
GCGGCCGAAG ACGAAGCCCG TGAAGTGGCC CGCCGCGCCC GCGCCGATGG CATGGTCCGC
GCCGTAGCCC TGGTGCCGAG CGGCGAATGG GGTGACCGTG TCCTGGCCGC CTTCCGCCAG
GACTGGGAAG GCAATGGCGG AACCCTGCTC GCCGCCCAGC GCATCGCCCA GCCGGTCGCC
CTGGCCCAGC AGATTGCCGA CCTGTTCCAG CTGCGCCAGA GCGAAGGCCG CGCCAAGAGC
CTGCAAAGCA CGGTGGGCGG CAGCATCGCT GCACAACCGT CGCGCCGCCA GGACATCGAC
TTCATCTTCC TCGCCTCGAC CCCACAACAG GCGCAGCAGA TCAAGCCGAC CCTGAACTTC
CAGTACGCCG GTGATGTGCC GGTCTATGCC ACCTCGAACC TGTACAGCGC CAGCGGTGAC
ATCAACCAGT ACAATGACAT GAACGGCATC CGCTTCTGCG AAACACCGTG GCTGCTCGAC
ACCAGCAACA GCCTGCGTCA ACAGGTTGTA CAGCAGTGGC CGCAAGCCGC TGGCAGCCTC
GGCCGCCTGT ATGCCATGGG CGTCGACGCC TACAGCCTGG CGCCGCGCCT GGGCCAGCTG
AAAGCGCTAC CAGACAACCG CATCCTGGGC CTTTCCGGCA GCCTGAGCAT CAATGCCAAC
CAGCGCGTCG AGCGCCAGCT GCCATGGGCC GAGTTCACCG GCGGCCAGGT CAAGCGCCTG
CCTGACACCG CGCGCTGA
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| Protein sequence | MIACLRLLTA LCLAALLAAC ASSPSSSLGE LPRTPDASIE QLLEKAASSK SAEDAALLRL
SAADLAYKQK DFPRAARILE QVPLDTLKPA QQVFASTLAA ELAMSRNQPK AALTALAHPS
LQRLAELPTE QQVRTYSVHA AALEADGQAL AAAQQRTLLA PLLGGQAAST NNDAIWALVA
SLPAEQLQQP TNDQTLAGWT SLAFAVKSAG TLEQQQAAIE AWVKQHPDHP AAQQLPLALT
KLKELASQPL TKIALLLPQE GPLAGVARAL RDGFMAAHFQ AQQSGQPAPA VQVFDSSRIG
SLDDFYRQAQ AAGVQLVIGP LEKPLVKQLA AKPQLPITTL ALNYADAGQK APPQLFQFGL
AAEDEAREVA RRARADGMVR AVALVPSGEW GDRVLAAFRQ DWEGNGGTLL AAQRIAQPVA
LAQQIADLFQ LRQSEGRAKS LQSTVGGSIA AQPSRRQDID FIFLASTPQQ AQQIKPTLNF
QYAGDVPVYA TSNLYSASGD INQYNDMNGI RFCETPWLLD TSNSLRQQVV QQWPQAAGSL
GRLYAMGVDA YSLAPRLGQL KALPDNRILG LSGSLSINAN QRVERQLPWA EFTGGQVKRL
PDTAR
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