| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4389 |
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| Symbol | murD |
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| ID | 5194715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4909841 |
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| End bp | 4911193 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588866 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_001269696 |
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| Protein GI | 148549594 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.348394 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.266317 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTGT CTTTGATCGC TTCCGACCAA TTCCGCATCG TTGTCGGCCT CGGCAAGAGC
GGCATGTCCC TGGTTCGCTT CCTGGCGAGC CGGGGCATTG CCTTTGCGGT CGCCGATACC
CGCGAGCAAC CGCCGGAAAT GGAAACCCTG CGCCGTGATT ACCCGCAGGT GGAAGTGCGC
TGTGGTGAAC TGGATGTGGA CTTCCTGTGC CGCGCCAACG AGTTGTACGT GAGCCCCGGT
CTGGCCTTGG CCACGCCGGC CTTGCAGCAG GCGGCCGCGC GTGGCGTGAA GCTGTCTGGC
GACATAGAGC TGTTTGCTCG CCATGCCAAG GCGCCGATCA TTGCCATCAG CGGTTCCAAC
GCCAAGAGCA CCGTCACGAC GCTGGTCGGT GAAATGGCCG CCAAGGCCGG CAAACGCGTG
GCCGTGGGCG GTAACCTCGG TACCCCGGCG CTCGACCTGC TGGCCGATGA CATCGAGCTG
TACGTGCTGG AGCTTTCCAG CTTCCAGCTG GAAACCACTG ACCAGCTCAA CGCCGAAGTG
GCGACTGTTC TGAACATCAG CGAAGACCAC ATGGACCGCT ATAGCGGCCT TCCGGCCTAC
CACCTGGCCA AGCACCGGAT TTTCCGCGGT GCCCGCCAGG TTGTGGTCAA CCGCCAGGAC
GCCCTGAGCC GGCCGCTGCC GGTGGAAGGC CGACCATGCT GGACCTTCGG CCTCAACTCG
CCCGACTTCA AAGCGTTTGG CCTGCGTGAA GTGGACGGTG AAAAATACCT GGCGTTCGAG
TTCCAGACGC TGATGCCGGC GCGTGAACTG AAGGTTCGCG GTGCTCACAA CCAGAGCAAC
GCCCTGGCGG CGCTGGCCCT GGGGCATGCT GCTGGCCTGC CGTTCGAGCC CATGCTCGCG
GCCCTGCGCG AGTTCGGTGG CCTGGCCCAC CGGTGCCAGT GGGTACGCGA GCGTAATGGC
GTGAACTGGT ACGACGATTC CAAGGCCACC AACGTCGGTG CTGCCCTGGC CGCCATCGAA
GGCCTGGGCG CCGATATCGA AGGCAAGTTG GTGCTGATCG CCGGTGGTGA CGGCAAAGGT
GCTGAATTCA CTGCGCTGCG CGAGCCGGTC AAGCGTTTCT GCCGCGCCGT GGTATTGCTC
GGCCGTGATG CCGAGCGCCT GGCCGAGGCC TTGGGCGATG CCGTGCCACT GGTTCGGGTC
AAGACGCTTG ACGATGCCGT ACAGCAGTGT GCCGAACTGG CCCAGGCCGG CGATGCCGTG
CTGCTGTCGC CAGCATGCGC CAGCCTCGAC ATGTTCAAGA ACTTCGAGGA ACGGGGGCGT
CTGTTCGCCC AGGCAGCGGG AGGTCTTGCA TGA
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| Protein sequence | MSVSLIASDQ FRIVVGLGKS GMSLVRFLAS RGIAFAVADT REQPPEMETL RRDYPQVEVR
CGELDVDFLC RANELYVSPG LALATPALQQ AAARGVKLSG DIELFARHAK APIIAISGSN
AKSTVTTLVG EMAAKAGKRV AVGGNLGTPA LDLLADDIEL YVLELSSFQL ETTDQLNAEV
ATVLNISEDH MDRYSGLPAY HLAKHRIFRG ARQVVVNRQD ALSRPLPVEG RPCWTFGLNS
PDFKAFGLRE VDGEKYLAFE FQTLMPAREL KVRGAHNQSN ALAALALGHA AGLPFEPMLA
ALREFGGLAH RCQWVRERNG VNWYDDSKAT NVGAALAAIE GLGADIEGKL VLIAGGDGKG
AEFTALREPV KRFCRAVVLL GRDAERLAEA LGDAVPLVRV KTLDDAVQQC AELAQAGDAV
LLSPACASLD MFKNFEERGR LFAQAAGGLA
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