| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4369 |
|---|
| Symbol | |
|---|
| ID | 5193704 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4885602 |
|---|
| End bp | 4887149 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640588846 |
|---|
| Product | AmpG-related permease |
|---|
| Protein accession | YP_001269676 |
|---|
| Protein GI | 148549574 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00901] AmpG-related permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0389334 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGTA AAACCTGGCG CGCTGCGCTT GCTGCCTATG CCAGCCCGTC AACATTGGTA
CTTTTGCTAC TCGGTTTCGC CGCCGGCCTA CCCTACATGC TGGTGTTTTC GACCCTGTCG
GTATGGTTGC GCGAAGCCGG CGTTGCCCGT GAAACCATCG GTTATGCAAG CCTGATTGGC
TTGGCCTACG CCTTCAAGTG GGTCTGGTCA CCGCTGCTCG ACCAATGGCG CTTGCCGCTG
CTTGGCGGCC TCGGGCGCCG GCGTTCGTGG CTGCTGTTGT CGCAAGCGCT GGTGGTGATC
GGGCTGGTCG GCATGAGCCT GTGCGACCCG CAACAGCATC TCTCCTGGCT GATTGCCATG
GCCGTACTGG TGGCTTTCGC CTCGGCTACC CAGGACATTG CTGTCGACGC CTACCGCCTG
GAAATCGCTG ACGACCAGCG CCAGGCCGCG CTCGCAGCCA GTTACATGGC CGGCTACCGG
GTGGCTGCCT TGCTCGCCAC GGCCGGTGCC CTGTTCTTCG CCGAGTGGTT CGGCTCTACC
GGCTTCAGCT ACCTGCACAA GGCCTGGGCC GGCACTTACG TGATGTTCGG GGTGATGATG
CTGCCCGCCC TGTTCACCAC GTTGGTCATG CGCGAACCGC CAGTGCCCAT GCGCACCCAA
CTGTCGGCAG CGCGCTACGG GCTGGTGCAC CAGATGGCTT CGGTGTTCGT GCTGATCATC
CTGCTGGTCT CGGTACCGGC CAGCTTCACC CAGATGTTCA ATACCGGCTG GTCCAGCGTG
GTCTCCGGTG ATGCCACGCC GCTCGACCTG CTGCTGGAAG ACCGCGCCTT CCTGCGCCTG
ATCCTCTACG TGCTGCTGAC CTGGGCCTGC CTGTCGAGCC TCGGCCGTCG CGGCCTGGCC
CCCGTGCTGA CCCCGATCAA CGACTTCATC ACCCGCTACC GCTGGCAGGC TCTGCTGCTG
CTCGGCCTGA TCGCCACCTA TCGCATGTCG GACACGGTGA TGGGGGTGAT GGCCAACGTG
TTCTATATCG ACATGGGCTT CACCAAGGAC CAGATTGCCA GCGTCAGCAA GATCTTCGGC
CTGATCATGA CCCTGGTCGG CGCCGGGGTT GGCGGCCTGC TGATCGTACG CTTCGGCATC
ATGCCCATCC TGTTCATTGG CGGCGTAGCC TCTGCCGGCA CCAACATCCT GTTCCTGATG
TTGGCTGACA TGGGGCCGAA CCTGGAAATG CTGGTGGTGA CCATCTCGCT GGACAACTTC
AGCTCCGGCA TGGCTACCTC GGCCTTTGTC GCCTACCTGT CCAGCCTGAC CAACCTGAAG
TTCTCGGCGA CCCAGTACGC GCTGCTCAGT TCGATCATGT TGCTGTTGCC GCGGCTGATC
GGCGGGTATT CGGGCGTTAT TGTGGAGAAG TTCGGCTACC ACGACTTCTT CCTGATCACG
GCGCTGCTGG GGGTGCCTAC GCTGATCCTG ATCGCCCTGC AGTGGCATCA GGAAGCCGGG
CGGGGAACGC CGGTGGCGGA CGACCACTCG GTGGCTGAGC GGCCCTGA
|
|---|
| Protein sequence | MPRKTWRAAL AAYASPSTLV LLLLGFAAGL PYMLVFSTLS VWLREAGVAR ETIGYASLIG
LAYAFKWVWS PLLDQWRLPL LGGLGRRRSW LLLSQALVVI GLVGMSLCDP QQHLSWLIAM
AVLVAFASAT QDIAVDAYRL EIADDQRQAA LAASYMAGYR VAALLATAGA LFFAEWFGST
GFSYLHKAWA GTYVMFGVMM LPALFTTLVM REPPVPMRTQ LSAARYGLVH QMASVFVLII
LLVSVPASFT QMFNTGWSSV VSGDATPLDL LLEDRAFLRL ILYVLLTWAC LSSLGRRGLA
PVLTPINDFI TRYRWQALLL LGLIATYRMS DTVMGVMANV FYIDMGFTKD QIASVSKIFG
LIMTLVGAGV GGLLIVRFGI MPILFIGGVA SAGTNILFLM LADMGPNLEM LVVTISLDNF
SSGMATSAFV AYLSSLTNLK FSATQYALLS SIMLLLPRLI GGYSGVIVEK FGYHDFFLIT
ALLGVPTLIL IALQWHQEAG RGTPVADDHS VAERP
|
|---|
| |