| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4342 |
|---|
| Symbol | |
|---|
| ID | 5194079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4857280 |
|---|
| End bp | 4857672 |
|---|
| Gene Length | 393 bp |
|---|
| Protein Length | 130 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640588819 |
|---|
| Product | 4-carboxymuconolactone decarboxylase |
|---|
| Protein accession | YP_001269649 |
|---|
| Protein GI | 148549547 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0599] Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit |
|---|
| TIGRFAM ID | [TIGR02425] 4-carboxymuconolactone decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0210047 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0491818 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGAGA AACAACGTTA CGACGCTGGC ATGCAAGTGC GCCGCGCAGT GCTGGGTGAT
GCCCACGTGG ACCGCAGCCT GGAGAAGCTT AACGACTTCA ATGGCGAGTT CCAGGAAATG
ATCACCCGCC ACGCCTGGGG TGACATCTGG ACCCGCCCGG GGCTACCGCG TCATACCCGT
AGCCTGATCA CCATCGCCAT GCTGATTGGC ATGAACCGCA ACGACGAGCT GAAGCTGCAC
CTGCGTGCGG CGGCCAACAA TGGTGTGACC CGCGACGAGA TCAAGGAAGT GCTGATGCAG
AGCGCGATCT ACTGCGGCAT TCCGGCGGCC AATGCCACGT TCCACATGGC TGAGTCGGTG
TGGGATGAAC TTGGCGTAGA GTCGCGCCAT TAA
|
|---|
| Protein sequence | MDEKQRYDAG MQVRRAVLGD AHVDRSLEKL NDFNGEFQEM ITRHAWGDIW TRPGLPRHTR
SLITIAMLIG MNRNDELKLH LRAAANNGVT RDEIKEVLMQ SAIYCGIPAA NATFHMAESV
WDELGVESRH
|
|---|
| |