| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4340 |
|---|
| Symbol | |
|---|
| ID | 5190844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4855202 |
|---|
| End bp | 4856458 |
|---|
| Gene Length | 1257 bp |
|---|
| Protein Length | 418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640588817 |
|---|
| Product | outer membrane porin |
|---|
| Protein accession | YP_001269647 |
|---|
| Protein GI | 148549545 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00498222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.156563 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATTT CGCTACCCGC ACGTCAGCTG CTGCCTGGCC TGTTGGCCAT GTCCTGCGCC
CTCCCCGCAT TCGCCGCCAA CGAAGGTGGT TTCATCGAGG ACGCCAAGGC CACCCTCAAC
CTGCGCAACT TCTACATCAA CCGCAACTTC GTCGACCCGG CCCACCCACA GGGCAAGGCC
GAGGAATGGA CACAAAGCTT CATCCTCGAT GCCCGTTCCG GTTTCACCCA GGGCACGGTC
GGTTTCGGCG TGGACGTACT GGGCCTGTAC TCGGTCAAGC TCGACGGTGG CAAAGGCACC
ACCAACACTC ACCTGCTGCC CGTGCATGGC GACGGCCGCC CGGCCGATGA TTTTGGTCGG
CTGGGTGTGG CGCTGAAGGC CAAGCTGTCC GAAACCGAGC TGAAAGTCGG TGAATGGATG
CCGGTACTGC CAATCCTGCG TTCGGACGAT GGCCGCTCAC TGCCGCAAAC CTTCCGCGGT
GGCCAGCTGA CCTCCAAGGA AATCGCCGGC CTGACCCTGT ACGCCGGCCA GTTCCGCGGC
AACAGCCCGC GCAACGATGC CAGCATGGAA GACATGTCGC TCAACGGCAA AGCCGCCTTC
ACCTCCGACC GTTTCAACTT CGGCGGCGGT GAGTACACCT TCAACGACAA GCGCACCATG
ATCGGCCTGT GGGATGCCCA GCTCAAGGAC ATCTACCGCC AGCAATACCT CAACCTGACG
CACAGCCAGC CGCTGGGCGA CTGGACGCTG GGCGCCAACC TGGGCTATTT CATTGGCAAG
GAAGATGGCG CCGAACGGGC CGGCAAGCTG GACAACCGCA CCGCCTCCGC CTTGCTTTCG
GCGCGCTACC AAGGCCACAC CTTTTACGTT GGCCTGCAGA AGGTCAGCGG CGACGATGCC
TGGATGCGGG TCAATGGCAC CAGTGGCGGT ACCCTGGCCA ACGACAGCTA CAATTCAAGC
TTCGACAATG CCAAGGAGCG TTCCTGGCAG GTTCGCCATG ACTTCAACTT CGCCACCGTC
GGCGTACCCG GCCTGACCCT GATGAACCGC TATATCAAGG GTGACAACGT CACCGTGGGC
AGCGTGGACG ATGGCAAGGA ATGGGCGCGG GAAACAGAGC TGGCCTATGT GGTGCAGTCG
GGCAGCTTCA AGGACCTGTC GGTGAAATGG CGCAACTCGA CCATGCGTCG CGACTTCAGC
ACCAACGCGT TCGATGAGAA CCGTGTGATT GTGAGTTATC CGCTGAATCT TCTGTGA
|
|---|
| Protein sequence | MSISLPARQL LPGLLAMSCA LPAFAANEGG FIEDAKATLN LRNFYINRNF VDPAHPQGKA
EEWTQSFILD ARSGFTQGTV GFGVDVLGLY SVKLDGGKGT TNTHLLPVHG DGRPADDFGR
LGVALKAKLS ETELKVGEWM PVLPILRSDD GRSLPQTFRG GQLTSKEIAG LTLYAGQFRG
NSPRNDASME DMSLNGKAAF TSDRFNFGGG EYTFNDKRTM IGLWDAQLKD IYRQQYLNLT
HSQPLGDWTL GANLGYFIGK EDGAERAGKL DNRTASALLS ARYQGHTFYV GLQKVSGDDA
WMRVNGTSGG TLANDSYNSS FDNAKERSWQ VRHDFNFATV GVPGLTLMNR YIKGDNVTVG
SVDDGKEWAR ETELAYVVQS GSFKDLSVKW RNSTMRRDFS TNAFDENRVI VSYPLNLL
|
|---|
| |