| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4339 |
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| Symbol | |
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| ID | 5195156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4853345 |
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| End bp | 4854799 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640588816 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_001269646 |
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| Protein GI | 148549544 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0952934 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.254961 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGT CTTTGTTGTC CCTGGCGGTA ACCGCTTTCA TTCTTGGCGG CTGCTCGCTG
ATCCCTGACT ACCAGACCCC AGAGGCGCCG GTGGCTGCAC AGTGGCCGCA AGGCCCTGCA
TACTCGCCGA CGCAATCGGC GGATGTTGCC GCTGCTGAAC AGGGCTGGCG CCAGTTCTTC
CACGACCCGG CGCTGCAACA GCTGATCCAG ACCTCGCTGG TCAATAACCG CGACCTGCGG
GTCGCGGCGC TGAACCTCGA TGCCTACCGT GCGCAATACC GCATTCAGCG CGCCGACCTG
TTCCCGGCAG TTTCGGCCAC CGGCAGTGGC AGCCGCCAGC GTGTCCCGGC GAACATGTCG
CAAACAGGCG AATCTGGCAT CACCAGCCAG TACTCGGCCA CCTTGGGCGT CAGCGCCTAC
GAGCTGGACC TGTTCGGCCG CGTGCGCAGC CTGACCGAGC AGGCCCTGGA AACCTACCTC
TCCAGCGAGC AGGCGCGTCG TTCCACGCAA ATCGCCCTGG TCGCCAGCGT GGCCAACGCC
TACTACACCT GGCAGGCCGA CCAGGCCCTG TTCAAGCTGA CCGAAGAAAC GCTGAAGACC
TACGAGGAAA GCTACAACCT CACCCGTCGC AGCAACGAGG TCGGCGTGGC ATCGGCCCTG
GACGTCAGCC AGGCGCGTAC CGCCGTGGAA GGCGCCAGGG TCAAGTACTC GCAGTACCAG
CGCCTGGTCG CCCAGGACGT CAACAGCCTG ACCGTGCTGC TGGGCACCGG CATTCCTGCC
GACCTGGCCA AGCCGCTGGA GCTTGATGCC GACCAACTGG CCGAAGTACC GGCCGGCCTG
CCATCGGATA TCCTTCAGCG TCGCCCGGAC ATTCAGGAAG CCGAGCACCT GCTCAAGGCC
GCCAACGCCA ACATTGGTGC AGCCCGCGCA GCGTTCTTCC CGAGCATCAG CCTGACCGCG
AACGCTGGTA GCCTGAGCCC CGACATGGGC CACCTGTTCG CGGGCGGCCA AGGCACCTGG
CTGTTCCAGC CGCAGATCAA CCTGCCGATC TTCAACGCCG GTAGCCTGAA AGCCAGCCTG
GACTACTCGA AAATCCAGAA GGACATCAAC GTCGCCAAGT ACGAAAAAAC CATCCAGACG
GCCTTCCAGG AAGTCTCCGA TGGCCTGGCG GCACGCAAGA CCTTCGAAGA GCAGTTGCAG
GCCCAGCGCG ACCTGGTGCA GGCGAACCAG GACTACTACC GCTTGGCCGA ACGCCGTTAC
CGCATCGGGA TTGACAGCAA CCTGACCTTC CTCGATGCCC AACGCAACCT GTTCAGTGCC
CAGCAAGCGC TGATCGGAGA CCGCCTGTCG CAGCTGACCA GCGAGGTCAA CCTGTACAAG
GCGCTTGGCG GTGGCTGGTA CGAGCAGACC GGGCAGGCCA ACCAGCAGGC ATCGGTGGAA
ACACCGAAAG GCTGA
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| Protein sequence | MTKSLLSLAV TAFILGGCSL IPDYQTPEAP VAAQWPQGPA YSPTQSADVA AAEQGWRQFF
HDPALQQLIQ TSLVNNRDLR VAALNLDAYR AQYRIQRADL FPAVSATGSG SRQRVPANMS
QTGESGITSQ YSATLGVSAY ELDLFGRVRS LTEQALETYL SSEQARRSTQ IALVASVANA
YYTWQADQAL FKLTEETLKT YEESYNLTRR SNEVGVASAL DVSQARTAVE GARVKYSQYQ
RLVAQDVNSL TVLLGTGIPA DLAKPLELDA DQLAEVPAGL PSDILQRRPD IQEAEHLLKA
ANANIGAARA AFFPSISLTA NAGSLSPDMG HLFAGGQGTW LFQPQINLPI FNAGSLKASL
DYSKIQKDIN VAKYEKTIQT AFQEVSDGLA ARKTFEEQLQ AQRDLVQANQ DYYRLAERRY
RIGIDSNLTF LDAQRNLFSA QQALIGDRLS QLTSEVNLYK ALGGGWYEQT GQANQQASVE
TPKG
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