Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4337 |
Symbol | |
ID | 5194946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4849038 |
End bp | 4850192 |
Gene Length | 1155 bp |
Protein Length | 384 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640588814 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001269644 |
Protein GI | 148549542 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.235617 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATTCA AGCCAGCCGT TACCGCTCTG GTTTCCGCCG TCGCCCTGGC AACCCTGCTC AGTGGCTGTA AGAAAGAAGA AGCAGCGCCA GCGGCGCAGG CTCCTCAGGT CGGCGTCGTG ACCATCCAGC CGCAAGCCTT CACCCTCACC TCGGAATTGC CGGGGCGAAC CAGTGCCTAC CGCGTCGCCG AAGTGCGCCC GCAGGTCAAC GGCATCATCC TCAAGCGCCT GTTCAAGGAA GGCAGTGAGG TCAAGGAAGG CCAGCAGTTG TATCAGATCG ACCCTGCCGT GTACGAAGCC ACACTGGCCA ATGCCAAGGC CAACCTGCTG GCTACACGCT CACTGGCCGA ACGTTACAAG CAACTGATTG ACGAACAGGC CGTCTCCAAA CAGGAGTACG ACGACGCCAA TGCCAAACGA TTGCAGGCTG AGGCTTCGCT CAAGAGCGCA CAGATCGACC TGCGCTACAC CAAGGTTCTG GCGCCGATCA GCGGCCGTAT CGGTCGCTCT TCGTTCACCG AGGGTGCGCT GGTGAGCAAT GGCCAGACCG ACGCCATGGC CACCATCCAG CAGCTCGATC CTATTTATGT CGACGTTACC CAGTCCACCG CCGAGCTGCT CAAGCTGCGC CGTGACCTGG AAAGCGGCCA GCTGAAGAAG GCCGGCGACA ACGCCGCCTC GGTTCAGCTG GTACTGGAAG ACGGCAGCCT GTTCAAGCAG GAAGGCCGCC TGGAGTTCTC CGAAGTCGCG GTGGACGAGA CCACCGGCTC GGTGACCCTG CGCGCGCTGT TCCCCAACCC CGATCACACC CTGCTGCCAG GCATGTTCGT GCATGCGCGG CTCAAGGCCG GGGTCAACGC CAACGCCATC CTGGCACCGC AACAAGGCGT GACCCGCGAC CTCAAGGGCG CACCCACCGC CCTGGTGGTC AACCAGGAGA ACAAGGTCGA ACTGCGCCAG CTCAAGGCCA GCCGCACCTT GGGTAGCGAC TGGCTGATCG AGGAAGGCCT CAACCCGGGT GACCGCCTGA TCACCGAAGG GCTGCAGTAC GTGCGCCCAG GCGTCGAGGT GAAGGTCAGC GATGCCACCA ACGTCAAGAA GCCGGCCGGC CCTGATCAGG CCAACGCGGC GAAAGCAGAC GCCAAAGCGG AGTAA
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Protein sequence | MQFKPAVTAL VSAVALATLL SGCKKEEAAP AAQAPQVGVV TIQPQAFTLT SELPGRTSAY RVAEVRPQVN GIILKRLFKE GSEVKEGQQL YQIDPAVYEA TLANAKANLL ATRSLAERYK QLIDEQAVSK QEYDDANAKR LQAEASLKSA QIDLRYTKVL APISGRIGRS SFTEGALVSN GQTDAMATIQ QLDPIYVDVT QSTAELLKLR RDLESGQLKK AGDNAASVQL VLEDGSLFKQ EGRLEFSEVA VDETTGSVTL RALFPNPDHT LLPGMFVHAR LKAGVNANAI LAPQQGVTRD LKGAPTALVV NQENKVELRQ LKASRTLGSD WLIEEGLNPG DRLITEGLQY VRPGVEVKVS DATNVKKPAG PDQANAAKAD AKAE
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