| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4323 |
|---|
| Symbol | |
|---|
| ID | 5193765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4836215 |
|---|
| End bp | 4837534 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640588800 |
|---|
| Product | major facilitator superfamily metabolite/H(+) symporter |
|---|
| Protein accession | YP_001269630 |
|---|
| Protein GI | 148549528 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0407657 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAACG CCACCTCCCT GCCCGCCGGG GCGGCCACCG CGCCTGCCGC AGAAAAAACC
ACCGCCAGCC GCCTGAAGTC GATTTTCAGC GGGTCCATCG GCAACATGGT CGAATGGTAC
GACTGGTACG TCTACGCCGC ATTCTCGCTG TACTTCGCCA AGGCCTTCTT CCCCGCCGGC
GACTCCACCG CACAACTGCT CAATACCGCT GCGATCTTCG CCGTGGGCTT CCTCATGCGC
CCGATCGGTG GCTGGCTGAT GGGCCTGTAC GCCGACCGCA AGGGCCGCAA GGCCGCGCTG
ATGGCGTCGG TACTGCTCAT GTGCGCAGGC TCGCTGGTCA TCGCCCTGAC CCCAGGTTAT
GAAACCATCG GCGTCGCCGC ACCTGTCCTG CTGGTCATCG CGCGCCTGCT GCAGGGCCTG
TCGGTGGGTG GTGAATACGG CACCTCGGCC ACCTACCTCA GCGAGATGGC CAGCAAGGAG
CGCCGTGGTT TCTTCTCCAG CTTCCAGTAC GTGACCCTGA TCTCTGGCCA GCTCATCGCC
CTGGCGGTCC TGATCGTCCT GCAACAGACC CTGACCACCG AGCAGTTGTA CGCCTGGGGC
TGGCGCGTGC CGTTCGTGAT CGGTGCGCTG TGCGCCGTGG TGGCCCTGTA CCTGCGTCGC
GGCATGGAAG AAACCGCCTC GTTCACCAAG AAGGAAAAGG CCAAGGAAAG CCTGATGCGC
ACCCTGCTGC GTCACCCCAA GGAGCTGATG ACCGTCGTTG GCCTGACCAT GGGCGGCACC
CTGGCCTTCT ACACCTACAC CACCTACATG CAGAAATACC TGGTCAACAC CGTGGGCATG
AGCATCAGTG ACTCAACCAC CATCTCGGCC GCCACGCTGT TCCTGTTCAT GTGCCTGCAG
CCGGTGATCG GTGGTCTGTC CGACAAGATC GGTCGCCGTC CGATCCTGAT CGCTTTCGGT
GTACTCGGCA CCCTGTTCAC CGTCCCCATC CTCAGCACCC TGCACACCAT CCAGACTTGG
TGGGGTGCGT TCTTCCTGAT CATGGCCGCA CTGATCATCG TAAGCGGCTA TACCTCGATC
AACGCCGTGG TCAAAGCCGA GCTGTTCCCT ACCGAGATTC GCGCCCTGGG CGTGGGCCTG
CCGTATGCCC TGACCGTGTC GATCTTCGGT GGCACCGCCG AATACGTGGC CCTGTGGTTC
AAAAGCGCTG GGATGGAGAG CGGCTTTTAC TGGTATGTCA CCGCCTGTAT CGCCTGCTCG
CTGCTGGTTT ACGCGACCAT GAAAGACACC AAGCAGCACT CGCGAATCAC CACTGAGTAA
|
|---|
| Protein sequence | MDNATSLPAG AATAPAAEKT TASRLKSIFS GSIGNMVEWY DWYVYAAFSL YFAKAFFPAG
DSTAQLLNTA AIFAVGFLMR PIGGWLMGLY ADRKGRKAAL MASVLLMCAG SLVIALTPGY
ETIGVAAPVL LVIARLLQGL SVGGEYGTSA TYLSEMASKE RRGFFSSFQY VTLISGQLIA
LAVLIVLQQT LTTEQLYAWG WRVPFVIGAL CAVVALYLRR GMEETASFTK KEKAKESLMR
TLLRHPKELM TVVGLTMGGT LAFYTYTTYM QKYLVNTVGM SISDSTTISA ATLFLFMCLQ
PVIGGLSDKI GRRPILIAFG VLGTLFTVPI LSTLHTIQTW WGAFFLIMAA LIIVSGYTSI
NAVVKAELFP TEIRALGVGL PYALTVSIFG GTAEYVALWF KSAGMESGFY WYVTACIACS
LLVYATMKDT KQHSRITTE
|
|---|
| |